Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 129 8e-25 >seq11 Length=169478 Score = 129 bits (142), Expect = 8e-25 Identities = 177/245 (72%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||| || ||||| || ||| || ||||||||||| || ||||| Sbjct 25116 CAAGCGAAGTCGGTGTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAGA 25057 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || | ||| |||||||| || ||||| ||||| || ||||| ||||| Sbjct 25056 CCAGGCATGAGACCCCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAAA 24997 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--CG-CTGTCATGT 50136 || ||||| || ||||| ||||| | | || ||| | | | | || ||||| Sbjct 24996 ATACCTTCAACGGCGGCGAAGGCGATCAATCGCTCGGCGAAGGTCGATCGTTTGTCAGTG 24937 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || | ||||| | |||||||||| | |||||| || || || ||||| | Sbjct 24936 ATCCATTTGAGTGCCCATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCTTCG 24877 Query 50197 AAGAG 50201 ||||| Sbjct 24876 AAGAG 24872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268458822320