Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 3e-14 >seq11 Length=169478 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| |||| || | ||||||||| | || |||||| || | ||||| ||||| Sbjct 9958 CCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAG 10017 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||||| | || || | |||||| ||||| ||||| | |||||||||||| | || Sbjct 10018 AGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGA 10077 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || ||| ||| ||| || || | | |||||| | ||| || Sbjct 10078 ATACCCTCCTTGTC-CTGAATCTTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAAC 10136 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || | || |||||||| || ||||| Sbjct 10137 TTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| ||||| | || ||| |||| || | |||||| || || ||| Sbjct 10222 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAAA 10281 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATC-AACTCTTTGACTC 43036 || | |||||||||||| | || | ||| || || || ||| ||| ||| || || Sbjct 10282 ATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTC-CTGAATCTTGCTC-TTCACGT 10339 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 || ||| || ||| | |||||| || | || || ||||| ||||| | ||| || | Sbjct 10340 TGTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGA 10399 Query 43097 CAAAAATTTGCAT 43109 | || |||||||| Sbjct 10400 CGAAGATTTGCAT 10412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369423378204