Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq33 134 2e-26 seq11 96.9 5e-15 >seq33 Length=1453386 Score = 134 bits (148), Expect = 2e-26 Identities = 338/510 (66%), Gaps = 8/510 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| |||| | || || |||||||| || Sbjct 850311 CAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTATCTAGAGCCCTGGCACGCCGAT 850370 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||||||| |||| |||| || || || ||||||| |||||| | || Sbjct 850371 GTCTTTGACTTCCTCGACTTGCGAAAGAATCACGGTAAGGAAGAGGTCCGAGCCCGTGAT 850430 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA---CGACGGTGGC 97052 | || || || |||||| | || || ||||||||||||| ||| | |||||||| Sbjct 850431 CTTTTCTACGCCCTCTGGATACCCGACCTGTTCATGAAGCGAGTCGAAGCCGACGGTG-- 850488 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| ||| ||||| || | | | || ||||| ||||| | || | || Sbjct 850489 -ACTGGACCCTCATGTGTCCTGCCGAATGCCCTGGTCTCGCCGATGTCCATGGAGCCGAA 850547 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 ||||| || || | |||||| | | ||| | || |||| | || | || Sbjct 850548 TTTGAAGCACTCTATGAAGGCTACGAAAAGGCCGGCAAGGGCCGAAAGACCA-TCAAGGC 850606 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| ||| |||||| | ||| ||| ||||| || ||||| ||||| || Sbjct 850607 TCAGAAACTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACCGGTACTCCCTACATGCT 850666 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||||||| | | ||| ||| ||||||| ||| |||| ||||||||| || Sbjct 850667 TTACAAGGATGCTGCAAATGCCAAGTCCAACCAAAAGCACCTGGGAACCATCAAGTCTTC 850726 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCT 97351 ||| |||| || ||||| | || ||| | |||| |||||| || || ||| | Sbjct 850727 CAACTTGTGTACCGAAATCATTGAATACTCTGCTCCTGACGAGGTCGCCGTCTGCAACTT 850786 Query 97352 GGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 ||| ||| || ||| ||| ||||| || Sbjct 850787 GGCCTCGCTCGCTCTTCCCGCCTTTGTTGA 850816 >seq11 Length=169478 Score = 96.9 bits (106), Expect = 5e-15 Identities = 212/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 |||||| | ||||| |||| ||||| || || |||| ||||| || | ||| Sbjct 24800 GAGAACATCCACTCTGAAACCTACTCCCTCCTCATCGACACCTACATCAAAGACGC-CAA 24858 Query 125319 CGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 | ||||| | |||| | || || ||||| | || | ||| | || |||||||| Sbjct 24859 CCACCGCACATTCCTCTTCGAAGCCATTGACACCATCCCTTGTATCCAAAAGAAGGCTCA 24918 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 ||||| | |||||| |||| | || | | |||||| || || | || || Sbjct 24919 ATGGGCACTCAAATGGATCACTGACAAACGATCGACCTTCGCCGAGCGATTGATCGCCTT 24978 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 ||||||||| || || || ||||| || ||| ||||| ||||||| ||||| ||||| Sbjct 24979 CGCCGCCGTTGAAGGTATTTTCTTCTCTGGTTCGTTTGCCTCCATCTTCTGGCTTAAGAA 25038 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 | | || |||||||| || || || | ||||| | || ||| | || ||||| || Sbjct 25039 GAGGGGTCTCATGCCTGGTCTCACATTCTCCAACGAACTCATCTCTAGGGATGAGGGACT 25098 Query 125558 ACACTGTGACTTTGC 125572 ||| ||||| || Sbjct 25099 CCACACCGACTTCGC 25113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058847996880