Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11 134 3e-26 seq12 105 2e-17 >seq11 Length=169478 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| | ||| || || | ||| || ||||| || ||||| || || ||||| Sbjct 9955 ATACCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCG 10014 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || |||||||| || || ||||| || | ||||||||||||| Sbjct 10015 GAGAGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGA 10074 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || || ||||||||| |||||||| ||||| || | ||| ||| | || Sbjct 10075 GGAATACCCTCCTTGTCCTGAATC-TTGCTTTTCACATTGTCGATGGTGTCGGATGACTC 10133 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| ||||| | || || ||||| |||||||| Sbjct 10134 AACTTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 131 bits (144), Expect = 4e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| ||||| || || ||||| || || |||| ||||| Sbjct 10200 AAGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTC 10259 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| ||||| ||||| || | ||||||||||||||| || || || || || Sbjct 10260 TTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTC 10319 Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||| ||||| || || || || | ||||||| | || || || || || || | Sbjct 10320 CTGAATC-TTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGG 10378 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || | || || || || || ||||| Sbjct 10379 TTTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 113 bits (124), Expect = 1e-19 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || ||||||| |||||| || || || ||||||||||| || | || || ||| Sbjct 10828 TAGTCGGACAGAGTTCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATCAATCTTTGCTGA 10887 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || || |||||||| || || ||||| | ||| || || || | |||||| | | Sbjct 10888 TCAGGGGGAATGCCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATGGTATC-CGA 10946 Query 104504 GG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || || ||||| || || |||||||| || ||||| Sbjct 10947 GGACTCGACCTCGAGGGTGATAGTCTTTCCGGTAAG 10982 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| ||| || | || || ||||| || || || || || |||||| || || | Sbjct 9373 AGCCGAAGCACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGT 9432 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || |||||||| || || | || ||| || || || || || ||||| Sbjct 9433 CCATCTTCCAGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCC 9492 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| | ||| ||||| || | ||||| | ||| || || || || Sbjct 9493 TTGTCCTGGATCTTAGATTTGACATTGTCGATAGTATCTGAGGATTCGACTTCGAGGGTG 9552 Query 104522 ATAGTCTTACCAGTAAG 104538 || ||||||||||| || Sbjct 9553 ATCGTCTTACCAGTGAG 9569 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 269077 aaaaaaaTCTGAATGGGCTCTGAAATGGAT-------AAACGATAGCGCGCCTTACGGAG 269129 ||| || || ||||||| || |||||||| ||||||| | |||| || | Sbjct 24907 AAAGAAGGCTCAATGGGCACTCAAATGGATCACTGACAAACGATCGA---CCTT-CGCCG 24962 Query 269130 AAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTA 269189 | | || | || || ||||| || |||||||| ||||| || || || |||||| | | Sbjct 24963 AGCGATTGATCGCCTTCGCCGCCGTTGAAGGTATTTTCTTCTCTGGTTCGTTTGCCTCCA 25022 Query 269190 TCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAA 269249 |||| ||| | ||||| || || || ||||| || | || ||||| |||||| | || Sbjct 25023 TCTTCTGGCTTAAGAAGAGGGGTCTCATGCCTGGTCTCACATTCTCCAACGAACTCATCT 25082 Query 269250 GCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 ||||| || || | ||| |||||||||||| Sbjct 25083 CTAGGGATGAGGGACTCCACACCGACTTCGCTTG 25116 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || || || ||||||| ||| || || || || ||||| || ||||| | | ||||| Sbjct 10514 TAATCGGACAGAGTTCGACCATCCTCAAGCTGCTTTCCCGCGAAAATCAAACGTTGTTGG 10573 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || ||||| || || ||||| ||||| | || || || || | ||||| Sbjct 10574 TCAGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTATCAGAT 10633 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 | ||| ||||| || ||||||||||| || || || Sbjct 10634 GATTCGACCTCAAGAGTAATAGTCTTCCCGGTGAG 10668 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || || || ||||| || ||||| ||||| || ||||||| || ||||| Sbjct 9655 ACAAGATGCAAGGTGGACTCTTTTTGGATATTGTAGTCTGAGAGAGTTCGTCCATCTTCC 9714 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || ||||| || ||||| | | |||||||||||||| || || ||| Sbjct 9715 AGCTGCTTTCCGGCGAAAATCAATCGTTGTTGATCAGGAGGGATGCCCTCT 9765 >seq12 Length=1921170 Score = 105 bits (116), Expect = 2e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || ||||||| || ||||| | || |||||| Sbjct 1262058 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGTCCATCTTCCAACTGCTTTCCA 1262117 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||||||||||| || |||||||| || ||||| ||||| | || Sbjct 1262118 GCAAAGATCAATCGTTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTTG 1262177 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||| || | || || | ||| ||||| || || || ||||| || || || Sbjct 1262178 ACATTGTCGATAGTGTCAGAGGATTCAACCTCGAGCGTGATGGTCTTGCCCGTGAG 1262233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397839412904