Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 >seq11 Length=169478 Score = 107 bits (118), Expect = 2e-18 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||||| ||| | | |||||| ||||| ||||| ||||| || | Sbjct 9945 AAAAATCTGCATACCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGAT 10004 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || ||| | ||||| | |||||| || ||||| ||| | || || | || Sbjct 10005 GTTGTAGTCGG--AGAGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGC 10062 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| ||||||||||| || ||||| | ||| || || || | ||| ||| Sbjct 10063 TGTTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTTTTCACATTGTCGATGGTG 10122 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | |||||||| || ||||| | || ||||||||||||||| Sbjct 10123 TCGGATGACTCAACTTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGC 10182 Query 95006 AT 95007 || Sbjct 10183 AT 10184 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| ||||| |||||||| | ||| || || || | ||| ||| || Sbjct 9381 CACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGTCCATCTTC 9440 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| ||||| | ||||| || | ||||| || || || || ||||| ||||| | Sbjct 9441 CAGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTG 9500 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || | ||||| | ||| ||| || | | ||||| || | ||||| || || Sbjct 9501 GATCTTAGATTTGACATTGTCGATAGTATCTGAGGATTCGACTTCGAGGGTGATCGTCTT 9560 Query 94978 TCCAGTAAGA 94987 ||||| ||| Sbjct 9561 ACCAGTGAGA 9570 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| ||||||| |||||||||||||| || ||||| ||||||||| Sbjct 10849 TCCTCAAGCTGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGGGGAATGCCTTCTTTG 10908 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | | | || || | | ||||| || | ||||| Sbjct 10909 TCTTGGATCTTGGATTTGACGTTGTCAATGGTATCCGAGGACTCGACCTCGAGGGTGATA 10968 Query 94973 GTTTTTCCAGTAAG 94986 || ||||| ||||| Sbjct 10969 GTCTTTCCGGTAAG 10982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290987061680