Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 120 4e-22 >seq11 Length=169478 Score = 120 bits (132), Expect = 4e-22 Identities = 175/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||| || ||||| || ||| || ||||||||||| || ||||| Sbjct 25116 CAAGCGAAGTCGGTGTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAGA 25057 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || | ||| |||||||| || ||||| || || || ||||| ||||| Sbjct 25056 CCAGGCATGAGACCCCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAAA 24997 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCG-CTGTCATGT 33480 || ||||| || || || ||||| || | || ||| | | | || ||||| Sbjct 24996 ATACCTTCAACGGCGGCGAAGGCGATCAATCGCTCGGCGAAGGTCGATCGTTTGTCAGTG 24937 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| || | ||||| | |||||||||| | |||||| || || || ||||| | Sbjct 24936 ATCCATTTGAGTGCCCATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCTTCG 24877 Query 33541 AAGAG 33545 ||||| Sbjct 24876 AAGAG 24872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946904100080