Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq33 315 2e-80 >seq33 Length=1453386 Score = 315 bits (348), Expect = 2e-80 Identities = 738/1105 (67%), Gaps = 24/1105 (2%) Strand=Plus/Plus Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 ||| ||| || ||||||| | | || || ||||| || ||||| ||| | ||| | Sbjct 850063 TGTTCAACGCCGGAACTCCTCACCCTCAAATGTCCTCCTGCTTCCTTGTCGCCATGCGAG 850122 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 |||| ||||| || || |||| || || | |||| || |||| || ||||||| || Sbjct 850123 ACGACTCCATTGACGGCATCTACGAGACTTTGAAGACCTGCGCTCAGATCTCCAAGACTG 850182 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCA 363748 | || || || || | || ||||| |||| || || | |||||| ||| | Sbjct 850183 CCGGAGGTATCGGACTTCACATTCACAACATTCGAGCCAAGGGCTCCTACATTGCCGGTA 850242 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808 | ||||||||||| || | || || ||||| || | |||||| || || | | Sbjct 850243 CCAACGGATACTCGAACGGTATCGTACCTATGCTCCGAGCCTTTGACGCCACCGCTCGTT 850302 Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868 ||||||||||||||||| ||||| || || ||||| || ||||| ||||| | Sbjct 850303 ACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTATCTAGAGCCCTGGC 850362 Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAA--AAGAGGAATTGC 363925 | |||||| | ||||| || || || | || || || ||||| || |||||| | | Sbjct 850363 ACGCCGATGTCTTTGACTTCCTCGACTTGCGAAAGAATCACGGTAAGGAAGAGG---TCC 850419 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 | || |||||||| ||||| || || ||| | | |||| || |||||||| || || | Sbjct 850420 GAGCCCGTGATCTTTTCTACGCCCTCTGGATACCCGACCTGTTCATGAAGCGAGTCGAAG 850479 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 | | | ||| | ||| | || || |||||| || ||||| ||||||| | Sbjct 850480 CCGACGGTGACTGGACCCTCATGTGTCCTGCCGAATGCCCTGGTCTCGCCGATGTCCATG 850539 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAA 364105 | | ||| | || || || || ||| || ||| || || |||| || ||||| | Sbjct 850540 GAGCCGAATTTGAAGCACTCTATGAAGGCTACGAAAAGGCCGGCAAGGGCCGAAAGACCA 850599 Query 364106 TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCT 364165 | || ||||| || ||||| |||||| | || | |||| ||||| || || |||| Sbjct 850600 TCAAGGCTCAGAAACTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACCGGTACTCCCT 850659 Query 364166 ATATGTTGTACAAAGATTCGTGCAACCG-CAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 | ||| | ||||| ||| | ||||| | |||||||||||| ||||||| || || || Sbjct 850660 ACATGCTTTACAAGGATGC-TGCAAATGCCAAGTCCAACCAAAAGCACCTGGGAACCATC 850718 Query 364225 CAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTA 364284 || |||| | |||||||| || ||||||||| | ||||| |||||| ||||| Sbjct 850719 AAGTCTTCCAACTTGTGTACCGAAATCATTGAATACTCTGCTCCTGACGAGGTCGCCGTC 850778 Query 364285 TGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-------AAAAGATG---GTACTTT 364334 || ||| | || ||| |||| ||||| || ||||| | ||| | |||| Sbjct 850779 TGCAACTTGGCCTCGCTCGCTCTTCCCGCCTTTGTTGACATGGAGAGACGGGTGTAC--- 850835 Query 364335 TGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTAT 364394 ||| | || | || | || | ||| | || || |||||||| ||||||| Sbjct 850836 -GACTTCAAGAAACTGCACGAGATCACCAAAGTTGTAACAAAGAATCTCGATCAGGTTAT 850894 Query 364395 CGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGAT 364454 | || || || || || | || || || |||||| | ||||| | || || Sbjct 850895 CAACCGCAACTACTACCCCGTCAAGGAGGCTCAGAACTCTAATTTCCGTCACAGACCCAT 850954 Query 364455 TGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTC 364514 ||||| ||||| || || ||||| || | ||| ||| | | ||| | || ||||| Sbjct 850955 CGGTCTGGGTGTTCAAGGTCTCGCCGATGCTTTCATGGCCTTGAGAATGCCTTTCGATTC 851014 Query 364515 GCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGAC 364574 ||||| |||||| | || || | ||||||| || ||||| || |||||| || Sbjct 851015 GCCTGCCGCTCGAGAGCTCAACATTCAGATCTTCGAGACAATCTACCATGCCGCGTTGGA 851074 Query 364575 TGCTTCGTGTGATTTGGC-AAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTC 364633 |||||||| || |||| | ||| |||||| || |||| ||||| || || Sbjct 851075 GGCTTCGTGCGAGCTGGCTCAGGTCCACGGGAAA-TATGAATCTTACGAGGGATCACCCA 851133 Query 364634 TTTCGCAGGGAAAATTCCAGTTTGA 364658 | || |||| ||| | || ||||| Sbjct 851134 TCTCTGAGGGCAAACTACAATTTGA 851158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352965429716