Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq11 120 3e-22 >seq11 Length=169478 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | || || | ||||| ||| | | Sbjct 10184 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAAGTTGAGTCATCC 10125 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| || || || ||||| |||||| Sbjct 10124 GACACCATCGACAATGTGAAAAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10065 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAA 24169 ||| |||| |||| || ||| || |||||||| ||| ||| | || || ||| || || Sbjct 10064 CAGCGACTCATTTTCGCCGGTAAACAACTCGAGGATGGACGTACAC-TCTCCGACTACAA 10006 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || || ||||| | ||||| ||| | || ||| ||||||| Sbjct 10005 CATCCAGAAGGAGTCTACGTTGCATTTGGTGCTCAGGTTGCGAGGAGG 9958 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || ||| | || ||| ||||||||||| || | Sbjct 10412 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGTCCTCC 10353 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || |||||| ||||| || || || ||||| |||||| Sbjct 10352 GATACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10293 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| |||| || || || ||||||||||| | ||| | || ||| || ||| Sbjct 10292 CAGCGACTCATTTTCGCTGGTAAACAACTCGAAGACGGACGAACCCTCTCCGACTACAAC 10233 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || ||||| || ||||| Sbjct 10232 ATCCAGAAGGAATCAACCCTTCAT 10209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935800885890