Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-21 seq12 87.8 2e-12 seq36 82.4 7e-11 >seq11 Length=169478 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| ||| ||||||| ||||||| ||||| || Sbjct 10412 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGTCCTCC 10353 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| || || ||||| || || ||||| ||||| ||| Sbjct 10352 GATACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10293 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || |||||| | ||||| | || || | ||| ||||| Sbjct 10292 CAGCGACTCATTTTCGCTGGTAAACAACTCGAAGACGGACGAACCCTCTCCGACTACAAC 10233 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || ||| | || || Sbjct 10232 ATCCAGAAGGAATCAACCCTTCATCTCGTTCT 10201 >seq12 Length=1921170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCAC 25090 ||||||| |||| || || || |||||||||||||| || || ||| || ||| Sbjct 1262220 CCATCACGCTCGAGGTTGAATCCTCTGACACTATCGA--CAATGTCAAGTCTAAGATCCA 1262163 Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150 ||||| ||||| ||||| ||||| ||||| || | || ||||| || || || || || Sbjct 1262162 GGACAAGGAAGGAATTCCCCCTGATCAACAACGATTGATCTTTGCTGGAAAGCAGTTGGA 1262103 Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||||| || ||| | ||| ||||| || || || || || || || || Sbjct 1262102 AGATGGACGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTTCA 1262052 >seq36 Length=922397 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGC 25080 || ||||| ||||||| | ||||| ||||| || ||||||||||| || || ||| Sbjct 25058 ACGGGTAAGACCATCACCCTTGAAGTCGAGTCTTCCGACACTATCGA--CAATGTCAAGT 25001 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 || ||| ||||| ||||| ||||| || ||||||||||| | ||||| || || | Sbjct 25000 CCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAACAGCGATTGATTTTCGCTGGAA 24941 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || ||||| | || ||| | ||| |||| Sbjct 24940 AGCAGTTGGAAGACGGACGAACTCTTTCCGACTACA 24905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327799314970