Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq11 136 3e-27 seq33 109 5e-19 seq12 102 7e-17 >seq11 Length=169478 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| ||||| ||||| |||| || ||||| || || || Sbjct 10412 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGTCCTCC 10353 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || ||||| ||||||||||||||||| || |||||| Sbjct 10352 GATACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10293 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || ||||| | || || || ||| ||||||| |||||| Sbjct 10292 CAGCGACTCATTTTCGCTGGTAAACAACTCGAAGACGGACGAACCCTCTCCGACTACAAC 10233 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | ||| | ||| | || | || || ||| Sbjct 10232 ATCCAGAAGGAATCAACCCTTCATCTCGTTCTTCGTCTCCGTGGTGGT 10185 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || ||||| | ||||| || | || Sbjct 10184 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAAGTTGAGTCATCC 10125 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||| || ||||| ||||||||||||||||| || |||||| Sbjct 10124 GACACCATCGACAATGTGAAAAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10065 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| ||||| | |||||| || || ||||||| |||||| Sbjct 10064 CAGCGACTCATTTTCGCCGGTAAACAACTCGAGGATGGACGTACACTCTCCGACTACAAC 10005 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||||| || | | ||||| |||||| Sbjct 10004 ATCCAGAAGGAGTCTACGTTGCATTTGGTGCTCAGGTTGCGAGGAGGT 9957 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 22318 GAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 ||||| || || || ||||||||||| | || || ||||| || ||| | || ||| Sbjct 9764 GAGGGCATCCCTCCTGATCAACAACGATTGATTTTCGCCGGAAAGCAGCTGGAAGATGGA 9705 Query 22378 CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437 || || |||| || ||||| || |||||||| |||||| | ||| | || ||||| || Sbjct 9704 CGAACTCTCTCAGACTACAATATCCAAAAAGAGTCCACCTTGCATCTTGTCTTGCGTCTG 9645 Query 22438 CGCGGAGGT 22446 || |||||| Sbjct 9644 CGAGGAGGT 9636 >seq33 Length=1453386 Score = 109 bits (120), Expect = 5e-19 Identities = 372/567 (66%), Gaps = 12/567 (2%) Strand=Plus/Minus Query 129511 TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCC 129570 ||||| | |||||||| ||||| ||||||||||| || ||| || || || ||| Sbjct 850981 TCGGCGAGACCTTGAACACCCAGACCGATGGGTCTGTGACGGAAATTAGAGTTCTGAGCC 850922 Query 129571 GACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTC 129630 | | ||| ||||||||| || |||| | | | |||||| |||| ||| Sbjct 850921 TCCTTGACGGGGTAGTAGTTGCGGTTGATAACCTGATCGAGATTCTTTGTTACAACTTTG 850862 Query 129631 GTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTG 129690 || | | | | | | || | |||| | | | || ||||| ||||| Sbjct 850861 GTGATCTCGTGCAGTTTCTTGAAGTCGTACACCCGTCTCTCCATGTCAACAAAGGCGGGA 850802 Query 129691 ACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATT 129750 | | | ||||||||| ||||||||||| |||| || ||| || | ||| Sbjct 850801 AGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAATGATT 850742 Query 129751 TCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATT--ACTTTTCATGT 129808 |||| ||||| || | || ||||| |||| |||||||| || |||| ||| | Sbjct 850741 TCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGCAT-T 850683 Query 129809 TGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGG 129868 |||| ||||| ||||| | |||||| || || || || ||| || | || | |||| Sbjct 850682 TGCA-GCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGATGG 850624 Query 129869 TCCTGAACA-AGTCTC-GAGCCTTGATCTGTCTTACAAAT-TTGCCACATTTCTCGTATG 129925 | | || ||| || |||||||||| ||||| | ||||| || ||||| Sbjct 850623 --CGAACCAGAGTTTCTGAGCCTTGATG-GTCTTTCGGCCCTTGCCGGCCTTTTCGTAGC 850567 Query 129926 CCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAG-CAACGGCGATTCACGC 129984 | |||| ||| ||||||||| | || || || | |||| | | ||| |||| Sbjct 850566 CTTCATAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGGGC-ATTCGGCA 850508 Query 129985 GGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACC 130044 |||||||| | |||| || || ||||||||||| ||||| |||| ||||||| | Sbjct 850507 GGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTATC 850448 Query 130045 CACAGGGCGTACAACAAATCTCGCGCT 130071 || |||||||| || | ||| || ||| Sbjct 850447 CAGAGGGCGTAGAAAAGATCACGGGCT 850421 >seq12 Length=1921170 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || ||| || | || || | ||| || |||| Sbjct 1262230 ACGGGCAAGACCATCACGCTCGAGGTTGAATCCTCTGACACTATCGACAATGTCAAGTCT 1262171 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || ||||| || ||||||||||| | || ||||| || || Sbjct 1262170 AAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAACAACGATTGATCTTTGCTGGAAAG 1262111 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || ||| || || ||||||| |||||||| || || || || || | || Sbjct 1262110 CAGTTGGAAGATGGACGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTTCAC 1262051 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || ||| ||||||| |||||| Sbjct 1262050 CTCGTCTTGAGATTGCGAGGAGGT 1262027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727805613470