Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq12 111 3e-19 >seq12 Length=1921170 Score = 111 bits (122), Expect = 3e-19 Identities = 135/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||||||| | ||||| |||| ||||| |||||| || || Sbjct 1696562 GGTCCCAACGGTTCCGGAAAGTCTACCTTGATCAAGCTCCTCACTGGTGAGACCGAGCCC 1696621 Query 280239 ACTGAGGG--GTCC-GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | |||| ||| || |||||||| |||||| || || | |||||| || || ||| Sbjct 1696622 AACAAGGGAGGTCAAGTCTGGAAGCACCCCAACTTGGTCATCGGTTACGTTGCCCAACAC 1696681 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || ||||||||||| || |||||||| ||| ||||| | | ||||| | ||||| Sbjct 1696682 GCCTTCCACCACATTGACAACCACCTCGACTCTACTCCCCTCGAGTACATGCTCTGGCGA 1696741 Query 280356 TA 280357 || Sbjct 1696742 TA 1696743 Score = 96.9 bits (106), Expect = 7e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || |||||||| |||||||||||||||||||| || || | || ||||| || | Sbjct 1696079 GGATCTCTGTCTGGTGGTTGGAAGATGAAGCTCGCTCTTGCCCGAGCCATGCTCTTCAAG 1696138 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| || || || ||||| ||||| ||| ||||| |||||| ||||| Sbjct 1696139 GCCGATATCCTTCTCCTCGACGAGCCCACCAATCACTTGGACGTTGTCAACGTCACCTGG 1696198 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| || || | | | ||| |||| ||||| ||||||||| Sbjct 1696199 CTGATCGACTACCTCACTTCCCTCACCCACTGCACCTCCATCATGGTCTCGCACGACTCT 1696258 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 1696259 GACTTCCT 1696266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836299571958