Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq11 161 2e-34 seq12 149 1e-30 seq36 123 5e-23 >seq11 Length=169478 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || | ||| ||||| || |||||||| || ||||||||||| | ||||| || Sbjct 9976 ACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTCG 10035 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || |||||||| ||||||| ||||| || || ||||| || |||||||| ||| Sbjct 10036 AGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGA 10095 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| || || ||||||||||| | ||| || |||||||| |||||||| || Sbjct 10096 ATCTTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTCTTG 10155 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| || || |||||||| Sbjct 10156 CCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || || || |||||||| || |||||||| || | || ||||| | || Sbjct 10210 TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGTTGT 10269 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| ||||||| ||||| || || ||||| || |||||||| |||||||| Sbjct 10270 TTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTG 10329 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||| ||| || ||||| || | || || ||||| | |||||||||||| || || Sbjct 10330 CTCTTCACGTTGTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTTTTGCCGGTC 10389 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | ||||||||||| || ||||| Sbjct 10390 AAAGTCTTGACGAAGATTTGCAT 10412 Score = 132 bits (146), Expect = 9e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| | || ||||| ||||||||||| || || | Sbjct 9364 CCACCACGGAGCCGAAGCACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCACTG 9423 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || | | || ||||||||||| Sbjct 9424 AGCGTGCGTCCATCTTCCAGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGGG 9483 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| | ||||| ||||| || |||| ||||| ||| Sbjct 9484 ATGCCTTCCTTGTCCTGGATCTTAGATTTGACATTGTCGATAGTATCTGAGGATTCGACT 9543 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | |||||| || || || ||||| Sbjct 9544 TCGAGGGTGATCGTCTTACCAGTGAG 9569 Score = 96.9 bits (106), Expect = 6e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || ||||| || | || | ||||||||||||||||| || || || ||| Sbjct 9637 CCTCCTCGCAGACGCAAGACAAGATGCAAGGTGGACTCTTTTTGGATATTGTAGTCTGAG 9696 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || | || |||||| || || || Sbjct 9697 AGAGTTCGTCCATCTTCCAGCTGCTTTCCGGCGAAAATCAATCGTTGTTGATCAGGAGGG 9756 Query 68355 ATGCCTTC 68362 ||||| || Sbjct 9757 ATGCCCTC 9764 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||||| || || | || || || | |||||| || || || || | |||||| || Sbjct 10828 TAGTCGGACAGAGTTCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATCAATCTTTGCTGA 10887 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || ||||||||||| |||||||| ||||| | |||||| || ||||| || | Sbjct 10888 TCAGGGGGAATGCCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATGGTATCCGAG 10947 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || | |||||| || ||||| || ||| Sbjct 10948 GACTCGACCTCGAGGGTGATAGTCTTTCCGGTAAGG 10983 >seq12 Length=1921170 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || | | ||| || | ||| || || ||||| || |||||||| || |||||| Sbjct 1262028 CCTCCTCGCAATCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1262087 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| |||||||| || || || || | || |||||| || || ||| Sbjct 1262088 AGAGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGGGGGA 1262147 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| | |||||| ||||| ||||| | ||||| || Sbjct 1262148 ATTCCTTCCTTGTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGATTCAACC 1262207 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | |||||||| || ||||||||| Sbjct 1262208 TCGAGCGTGATGGTCTTGCCCGTGAGG 1262234 >seq36 Length=922397 Score = 123 bits (136), Expect = 5e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||||| || || | || ||||| |||||||| || ||||| || | || |||||| Sbjct 24907 TAGTCGGAAAGAGTTCGTCCGTCTTCCAACTGCTTTCCAGCGAAAATCAATCGCTGTTGG 24966 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 ||||| ||||| ||||||||||| || ||||| | |||||| ||||| ||||| | Sbjct 24967 TCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAA 25026 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||||| | ||||||||| || ||||||||| Sbjct 25027 GACTCGACTTCAAGGGTGATGGTCTTACCCGTGAGG 25062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621962229360