Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq33 266 6e-66 seq11 165 2e-35 >seq33 Length=1453386 Score = 266 bits (294), Expect = 6e-66 Identities = 508/738 (69%), Gaps = 18/738 (2%) Strand=Plus/Minus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| |||||||||||| ||||| || | | ||| | | || ||||| || | Sbjct 850790 GGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAATGATTTCGGTACACAA 850731 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTT-GCAGGCGTCCT 244805 ||| |||||||||| |||||||||| || ||||||||||| || |||| | |||| Sbjct 850730 GTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGCATTTGCAG-CATCCT 850672 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 |||| |||||| |||| ||||||||| |||||| | |||| | | |||||| | Sbjct 850671 TGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGATGGCGAACCAGAGTT 850612 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||||| ||| | || ||||||| | ||||||| || || || | Sbjct 850611 TCTGAGCCTTGATGGTCTTTCGGCCCTTGCCGGCCTTTTCGTAGCCTTCATAGAGTGCTT 850552 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 | || |||| || ||| ||| | || || ||||| || || |||||||| ||| Sbjct 850551 CAAATTCGGCTCCATGGACATCGGCGAGACCAGGGCATTCGGCAGGACACATGAGGGTCC 850492 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || ||| || | | ||| | || |||||| |||||||| ||||||||||| | ||| | Sbjct 850491 AGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTATCCAGAGGGCGTAGAAAA 850432 Query 245046 GGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAA 245102 | || | || ||| | ||| ||| || ||| ||||| | || || | ||||||| Sbjct 850431 GATCACGGG--CTCGGACCTCTTCCTTACC-GTGATTCTTTCGCAAGTCGAGGAAGTCAA 850375 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 |||| ||| ||||||||||||| | |||| || | ||| || || |||||||| || | Sbjct 850374 AGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACCAGGACGCTTGTTTCCAC 850315 Query 245163 CCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 ||||||| | | | ||||| |||| ||| || || |||| || || ||| Sbjct 850314 CCTGGTCGA----CGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATAGGTACGATACCG 850259 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278 || |||| |||||||| || ||||||| ||||||| | | | |||| ||| Sbjct 850258 TTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATGTTGTGAATGTGA 850199 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | || | || ||||| ||||||||| | |||||| |||| | || || ||| Sbjct 850198 AGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTCAAAGTCTCGTAGATG 850139 Query 245339 CCCTCCATGCTGTCCGACT-TCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 || || ||| || || || |||| || || ||||||||||||| || || | || Sbjct 850138 CCGTCAATGGAGT-CGTCTCGCATGGCGACAAGGAAGCAGGAGGACATTTGAGGGTGAGG 850080 Query 245398 GCTGCACGAGTTGAACAG 245415 | | | ||||||||| Sbjct 850079 AGTTCCGGCGTTGAACAG 850062 >seq11 Length=169478 Score = 165 bits (182), Expect = 2e-35 Identities = 248/344 (72%), Gaps = 9/344 (3%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||| | ||||| || || || || || ||| | |||||||| | ||||| ||||| Sbjct 24872 CTCTTCGAAGCCATTGACACCATCCCTTGTATCCAAAAGAAGGCTCAATGGGCACTCAAA 24931 Query 42669 TGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||| || ||| | || |||| |||| | || | ||||| ||||||| || Sbjct 24932 TGGATCACTGACAAACGAT-CGACCTTCGCCGAGCGATTGATCGCCTTCGCCGCCGTTGA 24990 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GA 42786 || || |||||||| || | || ||||||||||||||||| ||| || ||| ||| | Sbjct 24991 AGGTATTTTCTTCTCTGGTTCGTTTGCCTCCATCTTCTGGCTTAAGAAG-AGGGGTCTCA 25049 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 |||| || ||||| ||||| |||||||||||| ||||| ||||| || || | |||| Sbjct 25050 TGCCTGGTCTCACATTCTCCAACGAACTCATCTCTAGGGATGAGGGACTCCACACCGACT 25109 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGG 42905 | || |||||||||||| | |||||| ||| | || || | ||| ||| | Sbjct 25110 TCGCTTGCCTCCTGTTC---ACCCACCTGAGG-AGGAGACCGCACCCTGAGACTGTCGAG 25165 Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 |||||| |||||||| |||| ||| |||||||||| || Sbjct 25166 CGGATCATCCGAGAGGCCGTCAAGATTGAGCAGGAGTTCCTGAC 25209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338751438880