Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq11 165 2e-35 seq12 111 4e-19 seq36 91.5 3e-13 >seq11 Length=169478 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| |||||||||| || ||| || ||||| || ||||||| | Sbjct 10186 CCACCACGGAGACGAAGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 10245 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||||||||| | |||||| || ||||| || || ||||||||| | || Sbjct 10246 AGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGA 10305 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || ||||| || || ||| |||||||| || || | |||| || || || Sbjct 10306 ATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCAATGGTATCGGAGGACTCGAC 10364 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| ||||| || || ||||||| |||||||||||| || ||||| Sbjct 10365 TTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | ||| || | || | || || |||||||| || ||||| Sbjct 9361 TGACCACCACGGAGCCGAAGCACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCA 9420 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 |||||||||||| ||||| | || ||||| |||||||||| ||||| || | Sbjct 9421 CTGAGCGTGCGTCCATCTTCCAGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGT 9480 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || |||||||| || | ||| || || || |||| ||| ||||| Sbjct 9481 GGGATGCCTTCCTTGTCCTGGATCTTAGATTTGACATTGTCGATAGTATCTGAGGATTCG 9540 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| ||||||||||| || || ||| Sbjct 9541 ACTTCGAGGGTGATCGTCTTACCAGTGAGA 9570 >seq12 Length=1921170 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || | ||| | ||||| |||| || || || ||||| || ||||||| | Sbjct 1262028 CCTCCTCGCAATCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1262087 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| || || ||||| || ||||||| || |||||| | || Sbjct 1262088 AGAGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGGGGGA 1262147 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || |||||||| || | || || || || |||| || ||||| || Sbjct 1262148 ATTCCTTCCTTGTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGATTCAACC 1262207 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||||||||| ||||| || || || Sbjct 1262208 TCGAGCGTGATGGTCTTGCCCGTGAG 1262233 >seq36 Length=922397 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||||| || || ||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 24907 TAGTCGGAAAGAGTTCGTCCGTCTTCCAACTGCTTTCCAGCGAAAATCAATCGCTGTTGG 24966 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 || |||||||| || |||||||| || | || || || || |||| ||| Sbjct 24967 TCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAA 25026 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || ||||| || ||||| ||||| || || || Sbjct 25027 GACTCGACTTCAAGGGTGATGGTCTTACCCGTGAG 25061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653825655764