Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq33 201 1e-46 seq11 113 5e-20 >seq33 Length=1453386 Score = 201 bits (222), Expect = 1e-46 Identities = 612/937 (65%), Gaps = 33/937 (4%) Strand=Plus/Minus Query 114285 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 114344 |||| ||||||||||| ||||| || || || || | || | | |||||| || ||| Sbjct 850983 CATCGGCGAGACCTTGAACACCCAGACCGATGGGTCTGTGACGGAAATTAGAGTTCTGAG 850924 Query 114345 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 114404 | || ||||| || | || | | ||||||| || ||||| || || ||||| | Sbjct 850923 CCTCCTTGACGGGGTAGTAGTTGCGGTTGATAACCTGATCGAGATTCTTTGTTACAACTT 850864 Query 114405 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG--ACATACTT 114462 | ||||| || || || || | | | || | || ||||| ||| ||| | Sbjct 850863 TGGTGATCTCGTGCAGTTTCTTGAAGTCGTACACCCG--TCTCTCCATGTCAACAAAGGC 850806 Query 114463 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 114522 ||||| |||| || |||| || || || | | ||| || | ||| ||| || || Sbjct 850805 GGGAAGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAAT 850746 Query 114523 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 114582 ||||| |||||||| || ||| ||| ||||| |||| || |||||| || ||||| | Sbjct 850745 GATTTCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGC 850686 Query 114583 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 114642 || |||||||||||||||||||| || || || ||||| || |||| || || || Sbjct 850685 ATTTGCAGCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGAT 850626 Query 114643 AGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT------CCTCCT 114695 || ||||| || | | || | ||| || ||| |||| ||| | Sbjct 850625 GGCGAACCAGAGTTTCTGAGCCTTG----ATGGTCTT---TCGGCCCTTGCCGGCCTTTT 850573 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755 |||| | ||||| |||||||| || | || | | || | ||| || || || | Sbjct 850572 CGTAGCCTTCATAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGG-GCAT 850514 Query 114756 T-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCT 114814 | | || || | ||| | ||| | ||| | | || || ||||||||||| ||||| Sbjct 850513 TCGGCAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCG 850454 Query 114815 GGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 114874 || |||||||| || |||| ||||| || || | ||||| | || ||||| Sbjct 850453 GGTATCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTT 850394 Query 114875 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 114934 ||||| || | ||||| | || ||| |||||||| || || || || | || | | Sbjct 850393 CGCAAGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCA 850334 Query 114935 CCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGA 114988 || | |||| ||| |||||| || || | || ||||| | ||| | || Sbjct 850333 CC---AGGACGCTTGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGG 850277 Query 114989 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGG 115046 ||||| || | |||||| | || | || || || || || || ||| | |||| Sbjct 850276 AGCATAGGTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCC--CTTGG 850219 Query 115047 CTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACT 115106 ||| | | || ||||| | || ||||| || || ||| ||||| || ||||| Sbjct 850218 CTCGAATGTTGTGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGG 850159 Query 115107 CCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGC 115166 | | | | | ||||||| ||||| || ||||| | | |||| |||||||||| Sbjct 850158 TCTTCAAAGTCTCGTAGATGCCGTCAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGG 850099 Query 115167 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 115203 |||||||| || || || || |||||||| || Sbjct 850098 AGGACATTTGAGGGTGAGGAGTTCCGGCGTTGAACAG 850062 >seq11 Length=169478 Score = 113 bits (124), Expect = 5e-20 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| ||||| || | ||||||||||| || ||||| || || ||||||||||| Sbjct 25102 GTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAGACCAGGCATGAGACC 25043 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || |||||| | |||||| || | ||| ||||| |||||||| || || || || Sbjct 25042 CCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAAAATACCTTCAACGGC 24983 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCA---AACCACTTCAT 126234 ||||| || | | ||||| || |||| ||| | ||||| | ||| || | Sbjct 24982 GGCGAAGGCGATCAATCGCTCGGCGAAGG---TCGATCGTTTGTCAGTGATCCATTTGAG 24926 Query 126235 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||||| || ||||| || | |||||| |||| ||| | || ||||| ||||| Sbjct 24925 TGCCCATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCTTCGAAGAG 24872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353316257040