Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq33 212 6e-50 >seq33 Length=1453386 Score = 212 bits (234), Expect = 6e-50 Identities = 489/734 (67%), Gaps = 6/734 (1%) Strand=Plus/Plus Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAG 93963 ||||||||||| || || || || || ||||| || || ||||| || || || | Sbjct 850062 CTGTTCAACGCCGGAACTCCTCACCCTCAAATGTCCTCCTGCTTCCT--TGTCGC-CATG 850118 Query 93964 ---GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 | ||||||||| ||| || | ||| | | ||| ||| || ||||| || Sbjct 850119 CGAGACGACTCCATTGACGGCATCTACGAGACTTTGAAGACCTGCGCTCAGATCTCCAAG 850178 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 || || || ||||| | | ||| || | || |||| ||| |||||||| | Sbjct 850179 ACTGCCGGAGGTATCGGACTTCACATTCACAACATTCGAGCCAAGGGCTCCTACATTGCC 850238 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 |||||||| || ||| ||||| |||| ||||||||||| | ||| || | | || Sbjct 850239 GGTACCAACGGATACTCGAACGGTATCGTACCTATGCTCCGAGCCTTTGACGCCACCGCT 850298 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 || ||||| ||||||||||| | | | ||| | || || ||||||| |||||| Sbjct 850299 CGTTACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTATCTAGAGCCC 850358 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||||| || || | ||| ||||| |||||||||| ||||| || || || Sbjct 850359 TGGCACGCCGATGTCTTTGACTTCCTCGACTTGCGAAAGAATCACGGTAAGGAAGAGGTC 850418 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | ||| | || || |||||||| |||||| | || ||||| || ||||| || ||||| Sbjct 850419 CGAGCCCGTGATCTTTTCTACGCCCTCTGGATACCCGACCTGTTCATGAAGCGAGTCGAA 850478 Query 94321 AAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGT 94380 || | ||||| || | ||||| ||||| || || || |||| || | Sbjct 850479 GCCGACGGTGACTGGACCCTCATGTGTCCTGCCGAATGCCCTGGTCTCGCCGATGTCCAT 850538 Query 94381 GGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTT 94440 ||| | ||||||| | |||| | |||||| | ||||||| | | ||| Sbjct 850539 GGAGCCGAATTTGAAGCACTCTATGAAGGCTACGAAAAGGCCGGCAAGGGCCGAAAGACC 850598 Query 94441 ATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCC 94500 || | ||| ||| || ||| ||| | || | ||| ||||| ||||| ||| Sbjct 850599 ATCAAGGCTCAGAAACTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACCGGTACTCCC 850658 Query 94501 TACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATC 94560 ||||| | | |||||| ||| || |||||||||||||| ||||||| || ||| Sbjct 850659 TACATGCTTTACAAGGATGCTGCAAATGCCAAGTCCAACCAAAAGCACCTGGGAACCATC 850718 Query 94561 AAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTG 94620 ||| || || |||| ||||| || | || || || |||| |||||| | || || Sbjct 850719 AAGTCTTCCAACTTGTGTACCGAAATCATTGAATACTCTGCTCCTGACGAGGTCGCCGTC 850778 Query 94621 TGTAACCTGGGCTC 94634 || ||| ||| ||| Sbjct 850779 TGCAACTTGGCCTC 850792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722965006480