Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 3e-14 seq11 89.7 4e-13 seq36 86.0 4e-12 >seq12 Length=1921170 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||||||||| || || | ||||| ||||| || || || |||||||| ||| | Sbjct 1262028 CCTCCTCGCAATCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1262087 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | ||||| || || || ||||| | ||||| || ||||| || ||| Sbjct 1262088 AGAGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGGGGGA 1262147 Query 15070 ATTCCTTCCTTGTC 15083 |||||||||||||| Sbjct 1262148 ATTCCTTCCTTGTC 1262161 >seq11 Length=169478 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || | |||||| || ||||| |||||||| || ||||| | | | ||||| Sbjct 9382 ACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGTCCATCTTCC 9441 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | ||||| ||||| |||||| ||| || ||||||||||| Sbjct 9442 AGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGG 9501 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || |||||||| ||| || || | ||| || || ||| Sbjct 9502 ATCTTAGATTTGACATTGTCGATAGTATCTGAGGATTCGACTTCGAGGGTGATCGTCTTA 9561 Query 15148 CCTGTCAGA 15156 || || ||| Sbjct 9562 CCAGTGAGA 9570 >seq36 Length=922397 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 14999 TGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTT 15058 |||| ||| ||| ||| ||||||| || || || |||||| | ||||| ||||||| Sbjct 24905 TGTAGTCGGAAAGAGTTCGTCCGTCTTCCAACTGCTTTCCAGCGAAAATCAATCGCTGTT 24964 Query 15059 GGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGC 15118 ||||| ||||||||||||||||| || ||| || ||| | || ||||| ||| Sbjct 24965 GGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGG 25024 Query 15119 TATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAG 15155 | || || || | ||| ||||| ||||| || || Sbjct 25025 AAGACTCGACTTCAAGGGTGATGGTCTTACCCGTGAG 25061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391834482830