Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 102 8e-17 >seq11 Length=169478 Score = 102 bits (112), Expect = 8e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||||||| | ||||||||| || || || ||||| ||| | || || ||| || Sbjct 9975 CACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTC 10034 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || ||||| || ||| | || | |||||| ||||| ||||| || |||||||||||| | Sbjct 10035 GAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCC-T 10093 Query 127024 GATTTTCTGC--TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081 || | | ||| || | | |||| |||||| | ||| ||||| | || | || Sbjct 10094 GAATCT-TGCTTTTCACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTC 10152 Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| |||| || || ||||| |||||||| Sbjct 10153 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || ||||| |||||| | || | |||||| ||||| ||||| || ||||||||| Sbjct 10258 TCTTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTG 10317 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || || ||| | |||| || | ||| || | ||||||||||| ||| | Sbjct 10318 TCCTGAATCTTGCTCTTCACGTTG-TCAATGGTATCGGAGGACTCGACTTCGAGGGTGAT 10376 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||||||||| ||| || || || || ||||| Sbjct 10377 GGTTTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500574137120