Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq33 174 2e-38 seq11 118 1e-21 seq37 89.7 6e-13 >seq33 Length=1453386 Score = 174 bits (192), Expect = 2e-38 Identities = 607/937 (65%), Gaps = 33/937 (4%) Strand=Plus/Minus Query 116246 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 116305 |||| ||||||||||| ||||| || || || || | || | | |||||| || ||| Sbjct 850983 CATCGGCGAGACCTTGAACACCCAGACCGATGGGTCTGTGACGGAAATTAGAGTTCTGAG 850924 Query 116306 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 116365 | || ||||| || | || | | ||||||| || ||||| || || ||||| | Sbjct 850923 CCTCCTTGACGGGGTAGTAGTTGCGGTTGATAACCTGATCGAGATTCTTTGTTACAACTT 850864 Query 116366 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG--ACATACTT 116423 | ||||| || || || || | | | || | || ||||| ||| ||| | Sbjct 850863 TGGTGATCTCGTGCAGTTTCTTGAAGTCGTACACCCG--TCTCTCCATGTCAACAAAGGC 850806 Query 116424 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 116483 ||||| |||| || |||| || || || | | ||| || | ||| ||| || || Sbjct 850805 GGGAAGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAAT 850746 Query 116484 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 116543 ||||| |||||||| || ||| ||| ||||| |||| || |||||| || ||||| | Sbjct 850745 GATTTCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGC 850686 Query 116544 GTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 116603 || ||||||||||| ||||| || || || || ||||| || |||| || || || Sbjct 850685 ATTTGCAGCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGAT 850626 Query 116604 AGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT------CCTCCT 116656 || ||| | || | | || | ||| || ||| |||| ||| | Sbjct 850625 GGCGAACCAGAGTTTCTGAGCCTTG----ATGGTCTT---TCGGCCCTTGCCGGCCTTTT 850573 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCT 116716 |||| | ||||| || ||||| || | || | || | ||| || || || | Sbjct 850572 CGTAGCCTTCATAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGG-GCAT 850514 Query 116717 T-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | ||||| | ||| | ||| | ||| | | || || ||||||||||| ||||| Sbjct 850513 TCGGCAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCG 850454 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 || |||||||| || |||| ||||| || || | ||||| | || ||||| Sbjct 850453 GGTATCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTT 850394 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-A 116894 ||||| || | ||||| | || ||| |||||||| || || || || | || | | | Sbjct 850393 CGCAAGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCA 850334 Query 116895 C-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 | | |||| ||| |||||| || || | || || |||| ||| | || Sbjct 850333 CCAGGACGCTTG---TTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGG 850277 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGG 117007 ||||| || | |||||| | || | || || || || || || ||| | |||| Sbjct 850276 AGCATAGGTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCC--CTTGG 850219 Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 ||| | | ||| ||||| | || ||||| || || ||| ||||| || ||||| Sbjct 850218 CTCGAATGTTGTGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGG 850159 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | | | | | ||||||| || || || ||||| | | |||| ||||||||| Sbjct 850158 TCTTCAAAGTCTCGTAGATGCCGTCAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGG 850099 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 |||||||| || || || || |||||||| || Sbjct 850098 AGGACATTTGAGGGTGAGGAGTTCCGGCGTTGAACAG 850062 >seq11 Length=169478 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||| || | ||||||||||| || ||||| ||||| ||||||||||| Sbjct 25102 GTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAGACCAGGCATGAGACC 25043 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || |||||| | |||||| || | ||| || ||||||||||| || || || || Sbjct 25042 CCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAAAATACCTTCAACGGC 24983 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCG 127709 ||||| || | | |||||||| |||| || ||||| | | ||| || | | Sbjct 24982 GGCGAAGGCGATCAATCGCTCGGCGAAGG-TCGATCGTTTGTCAGTGATCCATTTGAGTG 24924 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 |||| || ||||| || | |||||| |||| ||| | || ||||| ||||| Sbjct 24923 CCCATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCTTCGAAGAG 24872 >seq37 Length=816703 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || || || ||| |||||| || || ||||| || || ||||||||||||| |||| Sbjct 353583 CCTTCATCCCGGCTGATGAGCTCGTTGGAGAAAGTCAAGCCAGGCATGAGACCCCTCTTC 353524 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||| ||||||||| || ||| |||||||||||| || || |||||||| || || Sbjct 353523 TTCAGCCAGAAAATAGCCGCAAAGCTGCCAGAGAAGAATATGCCTTCCACACAAGCAAAA 353464 Query 127658 GC 127659 || Sbjct 353463 GC 353462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506908584080