Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq33 102 1e-16 seq11 98.7 2e-15 >seq33 Length=1453386 Score = 102 bits (112), Expect = 1e-16 Identities = 261/390 (67%), Gaps = 8/390 (2%) Strand=Plus/Minus Query 205127 GGACACATCAGAGACCA--CATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGA 205184 |||||||| || | ||| || | ||| ||| || | || ||| ||||||||| | Sbjct 850507 GGACACATGAGGGTCCAGTCACCG--TCGGCTTCGACTCGCTTCATGAACAGGTCGGGTA 850450 Query 205185 TCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCA 205244 |||| ||| |||| || ||||||||||| | | | || | || | |||||| || Sbjct 850449 TCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCA 850390 Query 205245 AGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCT 205303 |||| || ||| | | | ||||||||||| ||||||| | | ||| | || || Sbjct 850389 AGTCGAGG-AAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACCA 850331 Query 205304 GGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATC 205363 || | |||||| ||||||||||| || |||| | |||| || |||| ||||| Sbjct 850330 GGACGCTTGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATA 850271 Query 205364 GGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACG 205423 || || | |||||| | | ||||| || | | ||| ||||| | || | | | Sbjct 850270 GGTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATG 850211 Query 205424 TTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-CTCTTGCAG 205482 ||| ||| || || || || | | ||||| |||||| ||||| |||| || Sbjct 850210 TTGTGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTT-CAA 850152 Query 205483 AGTGCTGTAGATGCCTGCGATGGAATCGTC 205512 ||| ||||||||| | ||||| ||||| Sbjct 850151 AGTCTCGTAGATGCCGTCAATGGAGTCGTC 850122 >seq11 Length=169478 Score = 98.7 bits (108), Expect = 2e-15 Identities = 167/239 (70%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 ||||||||||| || |||||| ||| |||||||| |||| |||||||| |||||||| Sbjct 25125 AACAGGAGGCAAGCGAAGTCGGTGTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAG 25066 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | |||| || ||||||| || | | || ||||| || |||| ||||| | ||| Sbjct 25065 AATGTGAGACCAGGCATGAGACCCCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCA 25006 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGG--CGT 160091 || || || || || ||||| || || || | | | ||| | || | | ||| Sbjct 25005 GAGAAGAAAATACCTTCAACGGCGGCGAAGGCGATCAATCGCTCGGCGAAGGTCGATCGT 24946 Query 160092 TGGTGTCATGGGTCCACCTTTTG---GCCCATTCAGCCTTCTTTGCGATGCACGGCATG 160147 | ||||| | |||| |||| ||||||| |||||||||| ||| || || ||| Sbjct 24945 T--TGTCAGTGATCCA---TTTGAGTGCCCATTGAGCCTTCTTTTGGATACAAGGGATG 24892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154822301280