Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12 129 1e-24 seq11 116 9e-21 seq36 89.7 1e-12 >seq12 Length=1921170 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| | ||||| ||| ||||| ||||| |||||||| |||| ||||||||| | | ||| Sbjct 1262033 TCGCAATCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 1262092 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| ||||||||| || ||||| | || || || || || |||||| Sbjct 1262093 TCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGGGGGAATTCC 1262152 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| || |||| ||||| | | ||| || || | Sbjct 1262153 TTCCTTGTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGATTCAACCTCGAG 1262212 Query 199588 CGTGATCGTCTTACCCGTGAG 199608 |||||| ||||| |||||||| Sbjct 1262213 CGTGATGGTCTTGCCCGTGAG 1262233 Score = 105 bits (116), Expect = 2e-17 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || ||||||||||||||||||||| | ||| | |||| |||||| ||||||| Sbjct 1262125 ATCTTTGCTGGAAAGCAGTTGGAAGATGGACGAACTCTCTCCGACTACAACATCCAGAAG 1262066 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 ||||||||||||||||| || |||||| | ||| Sbjct 1262065 GAGTCTACTCTTCACCTCGTCTTGAGATTGCGA 1262033 >seq11 Length=169478 Score = 116 bits (128), Expect = 9e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||||||||||| |||||||||| | || | ||||||||||||||||||||| Sbjct 9394 GTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGTCCATCTTCCAGCTGCTTTCCA 9453 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||||||||||| || || ||||| ||||| ||||| || Sbjct 9454 GCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGATCTTAGATTTG 9513 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || |||| || |||| | ||| || || | |||||||||||||| |||||| Sbjct 9514 ACATTGTCGATAGTATCTGAGGATTCGACTTCGAGGGTGATCGTCTTACCAGTGAGA 9570 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| ||||||||| | | || | |||||| || || || || ||| Sbjct 9988 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTCGAGTTGTTTACCG 10047 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| ||||| ||||| || || ||| ||| || || ||||||||||| ||| Sbjct 10048 GCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTTTTC 10107 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || |||| |||||| | || || || ||||| ||||| ||||| || || | || Sbjct 10108 ACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTCTTGCCAGTCAAGGTC 10167 Query 199613 TTCACAAAAATTTG 199626 |||||||| || || Sbjct 10168 TTCACAAAGATCTG 10181 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || || || ||||| |||| ||||||||| | | || | ||| ||| Sbjct 10201 AGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCT 10260 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| ||||| ||||| || || ||| ||| || || ||| Sbjct 10261 TCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCC 10320 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| || | ||| || | | || || || | ||||| || Sbjct 10321 TGAATCTTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTT 10380 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || || ||||| Sbjct 10381 TTGCCGGTCAAAGTCTTGACGAAGATTTG 10409 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || |||||| || | || ||||| ||||||| |||||||| | | ||| Sbjct 9642 TCGCAGACGCAAGACAAGATGCAAGGTGGACTCTTTTTGGATATTGTAGTCTGAGAGAGT 9701 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||||||||||||||||||| || | || || || || ||| || || Sbjct 9702 TCGTCCATCTTCCAGCTGCTTTCCGGCGAAAATCAATCGTTGTTGATCAGGAGGGATGCC 9761 Query 199528 TTCTC 199532 |||| Sbjct 9762 CTCTC 9766 >seq36 Length=922397 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||||||| | | ||| | ||| ||||||| ||||||||| ||||| || | ||||| | Sbjct 24905 TGTAGTCGGAAAGAGTTCGTCCGTCTTCCAACTGCTTTCCAGCGAAAATCAATCGCTGTT 24964 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| ||| ||||||||| ||||| ||||| ||| || |||| ||||| | Sbjct 24965 GGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGG 25024 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 | || || || | ||||| |||||||||||||| Sbjct 25025 AAGACTCGACTTCAAGGGTGATGGTCTTACCCGTGAG 25061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921026012546