Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq11 145 8e-30 seq37 82.4 8e-11 >seq11 Length=169478 Score = 145 bits (160), Expect = 8e-30 Identities = 165/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||||||||||||| |||| |||||| || || Sbjct 10412 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGTCCTCC 10353 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || || | ||||| ||||| ||||| | || | Sbjct 10352 GATACCATTGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATC 10295 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||||| ||| || ||||| || || |||| || |||||| |||||||| Sbjct 10294 AACAGCGACTCATTTTCGCTGGTAAACAACTCGAAGACGGACGAACCCTCTCCGACTACA 10235 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| | || || ||| | || || ||| Sbjct 10234 ACATCCAGAAGGAATCAACCCTTCATCTCGTTCTTCGT 10197 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || || ||| | || Sbjct 10184 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAAGTTGAGTCATCC 10125 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| || || | ||||| ||||| ||||| | || ||| Sbjct 10124 GACACCATCGACAATGTGAAAAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10065 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| || ||||| || || || | || || ||| |||||||||| Sbjct 10064 CAGCGACTCATTTTCGCCGGTAAACAACTCGAGGATGGACGTACACTCTCCGACTACAAC 10005 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | ||| ||||||||||||| | ||| |||| || Sbjct 10004 ATCCAGAAGGAGTCTACGTTGCATTTGGTGCTCAGGTTGCGAGGAGG 9958 Score = 114 bits (126), Expect = 1e-20 Identities = 227/335 (68%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| | |||||| |||||| || | ||||| ||||| || |||||||||||| Sbjct 25127 TGAACAGGAGGCAAGCGAAGTCGGTGTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGG 25068 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | || |||||||| || | || || ||||| || |||| ||| || | Sbjct 25067 AGAATGTGAGACCAGGCATGAGACCCCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAAC 25008 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||| | || || ||||| ||||| || | || |||||| |||| || | | Sbjct 25007 CAGAGAAGAAAATACCTTCAACGGCGGCGAAGGCGATCAATCGCTCGGCGAAGGTCGATC 24948 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 |||| | |||||| || ||||||| ||||| | || || || || || || | Sbjct 24947 GTTTGTCAGTGATCCATTTGAGTGCCCATTGAGCCTTCTTTTGGATACAAGGGATGGTGT 24888 Query 133124 CGATGGCGTTCAACA--AA----CGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGA 133177 | ||||| | || | || ||| | || | || | | ||||||||||| Sbjct 24887 CAATGGCTTCGAAGAGGAATGTGCGGTGGTTGGCGTCTTTG------ATGTAGGTGTCGA 24834 Query 133178 TGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212 ||||| || || |||| ||||| | ||||||| Sbjct 24833 TGAGGAGGGAGTAGGTTTCAGAGTGGATGTTCTCC 24799 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 ||||| || || || |||||| |||| ||||| || | || | | | | | ||| Sbjct 9569 CTCACTGGTAAGACGATCACCCTCGAAGTCGAATCCTCAGATACTATCGACAATGTCAAA 9510 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| || || || || ||||||| |||||| | || | ||| || Sbjct 9509 TCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAGCAGCGGTTGATCTTCGCTGGA 9450 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || |||||||| || | ||||| |||| |||||||||||||||||||| | || || Sbjct 9449 AAGCAGCTGGAAGATGGACGCACGCTCAGTGACTACAACATCCAAAAGGAGTCTACCTTG 9390 Query 38445 CATTTGGTGCTGCG 38458 || |||||||| || Sbjct 9389 CACTTGGTGCTTCG 9376 >seq37 Length=816703 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 ||||| |||||| |||||||||||| |||||||| || | || || ||||| || || Sbjct 353568 ATGAGCTCGTTGGAGAAAGTCAAGCCAGGCATGAGACCCCTCTTCTTCAGCCAGAAAATA 353509 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 || || || ||||| || ||||| | ||| || || || ||||| ||||| || || Sbjct 353508 GCCGCAAAGCTGCCAGAGAAGAATATGCCTTCCACACAAGCAAAAGCGACCAGTCGAACG 353449 Query 133051 CCGAA 133055 | ||| Sbjct 353448 CGGAA 353444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172562417920