Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq11 113 2e-19 seq12 98.7 4e-15 seq38 89.7 2e-12 >seq11 Length=169478 Score = 113 bits (124), Expect = 2e-19 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || || |||||||||||||| || ||||||||||||| ||||| | || Sbjct 10668 CTCACCGGGAAGACTATTACTCTTGAGGTCGAATCATCTGATACGATTGACAACGTCAAG 10609 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || || || ||||| |||||||| ||||| ||||||||||| |||||| | || Sbjct 10608 TCGAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAACAACGTTTGATTTTCGCGGGA 10549 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTA 391225 || || ||||| ||||| ||||| || | ||||| Sbjct 10548 AAGCAGCTTGAGGATGGTCGAACTCTGTCCGATTA 10514 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || ||||| || || || || || || || || Sbjct 10412 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGTCCTCC 10353 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || || ||||| || ||||| || ||||||||||||||| Sbjct 10352 GATACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10293 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | |||||| | || |||||||| ||||| ||| |||| | | || || || Sbjct 10292 CAGCGACTCATTTTCGCTGGTAAACAACTCGAAGACGGACGAACCCTCTCCGACTACAAC 10233 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||| ||||| Sbjct 10232 ATCCAGAAGGAATCAACCCTTCA 10210 Score = 98.7 bits (108), Expect = 4e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || || ||| | || ||||| ||||| Sbjct 10184 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAAGTTGAGTCATCC 10125 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | ||| || ||||| || ||||| || ||||||||||||||| Sbjct 10124 GACACCATCGACAATGTGAAAAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10065 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGA 391208 || || | |||||| | || |||||||| || |||||| Sbjct 10064 CAGCGACTCATTTTCGCCGGTAAACAACTCGAGGATGGA 10026 >seq12 Length=1921170 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || || || || || || || |||||||| ||||| | || || | | || Sbjct 1262233 CTCACGGGCAAGACCATCACGCTCGAGGTTGAATCCTCTGACACTATCGACAATGTCAAG 1262174 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || || || |||||||||||||| |||||||||||||| || || || | || Sbjct 1262173 TCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAACAACGATTGATCTTTGCTGGA 1262114 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || || | ||||||||| ||||| | | || || || || | ||||| | || ||| Sbjct 1262113 AAGCAGTTGGAAGATGGACGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTT 1262054 Query 391251 CACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || ||| || ||||| Sbjct 1262053 CACCTCGTCTTGAGATTGCGAGGA 1262030 >seq38 Length=784392 Score = 89.7 bits (98), Expect = 2e-12 Identities = 243/368 (66%), Gaps = 8/368 (2%) Strand=Plus/Minus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||||||||| || || || ||||| || | || ||||| || || || || || Sbjct 317600 CTCCTGAAGAGATCTCCTCCATGGTCCTGATCAAGATGAAGGAGACCGCCGAGGCTTACC 317541 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | || | | || | | || || || ||||||||||| || ||||| || | || | Sbjct 317540 TCGGAGGTACCGTCTCCAAGGCTGTCATCACTGTTCCCGCCTACTTCAACGACTCCCAGC 317481 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | ||||| || || ||||| || | ||||||||| | | ||||| || || || || | Sbjct 317480 GTCAAGCCACCAAGGATGCCGGTCTCATTGCTGGTCTTGAGGTTCTCCGTATCATCAACG 317421 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA--GAAGaaaa 451479 | || || || |||||| | || || || || | | | || || || | ||| | Sbjct 317420 AGCCCACTGCCGCTGCTATCGCCTACGGTCTCG--ACAAGAAGGGAGCCAAGGGCGAACA 317363 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGA 451539 || | | | || ||| | ||||| || ||| ||| || | | | ||||| Sbjct 317362 GAACGTCCTCATCTTCGATCTCGGTGGTGGTACTTTCGATGTGTCCCTTTTGACCATTGA 317303 Query 451540 AGATGGGGTATTT--GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || |||||||| ||||| |||||||| || || || ||||| ||||| ||||| Sbjct 317302 GGA--GGGTATTTTCGAAGTCAAGGCAACTGCCGGAGACACCCATCTCGGAGGAGAAGAC 317245 Query 451598 ATTGATAA 451605 |||| || Sbjct 317244 TTTGACAA 317237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717438072104