Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq38 165 6e-35 >seq38 Length=784392 Score = 165 bits (182), Expect = 6e-35 Identities = 341/501 (68%), Gaps = 11/501 (2%) Strand=Plus/Plus Query 517811 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACA 517868 |||||||| |||||| ||| | || || || | || || ||||| || ||||| | Sbjct 317024 CAAAGTTCCTCGAATCGAGCACGGGT--GATGGAAGTGTAAAAGTCAATACCATCGAAGA 317081 Query 517869 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 517928 ||| |||| |||||| |||||||||| | |||||| || | | || |||||||||| Sbjct 317082 GAGAGTCAATTTCAATGGTAGTTTGAGCGGCAGAAGACAGAGTTCTCTTCGCACGTTCAC 317141 Query 517929 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTT 517986 | || || || || | ||| | |||| || ||| | | | || | || | || Sbjct 317142 AGGCGGTTCTCAGACGTCGGACGGCTCGGGCG--TTGCCAGTGATGTCCTTCTTGTTCTT 317199 Query 517987 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046 || |||||| || | ||| | | || ||||| || ||||| ||||| ||||| | Sbjct 317200 TCGCTTGAACTCCTGGACAAAGTGGCTGACGAGACGGTTGTCAAAGTCTTCTCCTCCGAG 317259 Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106 | || | ||| | || || | |||| ||||| || || |||| | |||||| | Sbjct 317260 ATGGGTGTCTCCGGCAGTTGCCTTGACTTCGAAAATACCCTCCTCAATGGTCAAAAGGGA 317319 Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT---TTGTCTTG 518163 ||||| || |||||||| | ||| || || || || ||| ||| ||| || Sbjct 317320 CACATCGAAAGTACCACCACCGAGATCGAAGATGAGGACGTTCTGTTCGCCCTTGGCTCC 317379 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 || || || ||||| || || | |||||| ||||| || || || || || | | ||| Sbjct 317380 CTTCTTGTCGAGACCGTAGGCGATAGCAGCGGCAGTGGGCTCGTTGATGATACGGAGAAC 317439 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | |||||||||||| || ||||| || |||||||| | || || ||||| || || Sbjct 317440 CTCAAGACCAGCAATGAGACCGGCATCCTTGGTGGCTTGACGCTGGGAGTCGTTGAAGTA 317499 Query 518284 TGCAGGAACAGTAATAACGGC 518304 || |||||||| || || || Sbjct 317500 GGCGGGAACAGTGATGACAGC 317520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780820514314828