Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq38 275 8e-69 seq2 134 2e-26 seq35 93.3 5e-14 seq33 86.0 8e-12 >seq38 Length=784392 Score = 275 bits (304), Expect = 8e-69 Identities = 803/1244 (65%), Gaps = 52/1244 (4%) Strand=Plus/Plus Query 6620 TCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCC 6679 ||||| |||||| ||||| || || || || || ||||| | || || | || | Sbjct 316354 TCTTTGCTTAATCTACCCTTGTCGTTGGTGATAGTGATCTTGGAGCTCTTTCCAGTGGTC 316413 Query 6680 TTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATT 6739 || || ||| | || ||||| ||||| || || || |||||||| || | || Sbjct 316414 TTGTCGGAAGCGCCGACGTTCAAGATACCGTTGGCGTCGACATCGAAAGAGACTTCGATC 316473 Query 6740 TGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTG 6799 ||||| || | || |||| || ||||| | | || || | || || || || Sbjct 316474 TGTGGGACTCCACGAGGGGCGGGGGGGATACCGGCGAGCTCGAACTTTCCGAGCAAGTTG 316533 Query 6800 TTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTA 6859 ||| | | ||| |||||| ||||| ||||||| ||| || ||||||| || Sbjct 316534 CAGTCCTTGGTCTTGGCACGTTCTCCTTCGTAGACTTGGATTAAGACTCCAGGTTGGTTG 316593 Query 6860 TCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATA 6919 || || |||||||||| ||||| | ||| | || || |||| | || Sbjct 316594 TCGGCGTAAGTGGAGAAGATTTCGGACTTCTTGGTTGGGACTGTGGTGTTTCGCTTGATC 316653 Query 6920 ACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAG 6979 | || ||||| |||||||| || |||| || | || |||| | ||||| | Sbjct 316654 AAAGGAGTCATGATACCACCAGCGGTCTCGATACCCATGGAAAGAGCGGCAACGTCGAGA 316713 Query 6980 AGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTC 7039 || |||||||| ||| | ||| ||||| || | |||||||| ||||| | Sbjct 316714 AGCAACAGGTCCTGAGTGGCCTCGGAAGTGTCACCGGTAAGAATGGCGGCCTGGACGGCG 316773 Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||| | || || ||||| |||||||| || | | | || | ||| || | || Sbjct 316774 GCACCGAAAGCAACGGCCTCGTCGGGGTTGATAGATCTGTTGGGCTCTCGTCCACTGAAC 316833 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC---- 7155 || | | | || || || ||||| || || ||||| ||||||||||| Sbjct 316834 ATGTCGGCGACTTGCTTCTGGATCTTGGGGATACGGGTGGATCCTCCGACCAAAACTAGA 316893 Query 7156 ------------GAT---------------TTCAT-TCACTT-------TCGAT------ 7174 ||| ||||| |||||| ||| | Sbjct 316894 GGCTAGTCAGTAGATGGCCCCCAGCGCACGTTCATGTCACTTACCAATCTCGTTGACGGA 316953 Query 7175 ----TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAA 7230 || || ||||| | ||| || || || |||||||| ||||| ||||| Sbjct 316954 AGCCTTGTCCATCTTAGCGTCACGGAGAACCTTCTCGACAGGCTCCATGGTGGATCGGAA 317013 Query 7231 CAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCC 7290 | |||| || |||||||| || || |||||||| ||||| || || || |||| || Sbjct 317014 GAGGTCCTGGCAAAGTTCCTCGAATCGAGCACGGGTGATGGAAGTGTAAAAGTCAATACC 317073 Query 7291 GTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGC 7350 ||| | | || |||||||||||||| ||||| || | ||||| | |||| ||| || Sbjct 317074 ATCGAAGAGAGAGTCAATTTCAATGGTAGTTTGAGCGGCAGAAGACAGAGTTCTCTTCGC 317133 Query 7351 GCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTT 7410 || ||||| || |||| | ||| || | ||| || | ||| || | || || ||||| Sbjct 317134 ACGTTCACAGGCGGTTCTCAGACGTCGGACGGCTCGGGCGTTGCCAGTGATGTCCTTCTT 317193 Query 7411 ATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACC 7470 | || || || ||||| | ||||| | | ||| | || || ||||| || Sbjct 317194 GTTCTTTCGCTTGAACTCCTGGACAAAGTGGCTGACGAGACGGTTGTCAAAGTCTTCTCC 317253 Query 7471 ACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAA 7530 || | || || || || || || || |||||||| || ||||| | |||||| | || Sbjct 317254 TCCGAGATGGGTGTCTCCGGCAGTTGCCTTGACTTCGAAAATACCCTCCTCAATGGTCAA 317313 Query 7531 CAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG---TC 7587 | || ||||| || ||||||||||| || || || ||||| |||||| ||| | Sbjct 317314 AAGGGACACATCGAAAGTACCACCACCGAGATCGAAGATGAGGACGTTCTGTTCGCCCTT 317373 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 | || ||||| ||||||||||| |||||||| || || || || || || || ||||| Sbjct 317374 GGCTCCCTTCTTGTCGAGACCGTAGGCGATAGCAGCGGCAGTGGGCTCGTTGATGATACG 317433 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| | || |||||||| | ||||| || || ||||| || || || ||||| Sbjct 317434 GAGAACCTCAAGACCAGCAATGAGACCGGCATCCTTGGTGGCTTGACGCTGGGAGTCGTT 317493 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| || || || | ||| || | | ||| | ||||| || | || || Sbjct 317494 GAAGTAGGCGGGAACAGTGATGACAGCCTTGGAGACGGTACCTCCGAGGTAAGCCTCGGC 317553 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | | || ||||| ||| | || ||||| || || |||||||||| Sbjct 317554 GGTCTCCTTCATCTTGATCAGGACCATGGAGGAGATCTCTTCAG 317597 >seq2 Length=672263 Score = 134 bits (148), Expect = 2e-26 Identities = 470/723 (65%), Gaps = 27/723 (4%) Strand=Plus/Minus Query 7014 CCGTTAAGAT-GGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 ||| ||||| ||| ||||| || | || ||||| || || || ||||||||||| || Sbjct 599249 CCGGTAAGAACGGCTGCTTGAACAGCAGCTCCGTAGGCAACGGCTTCATCGGGGTTGATA 599190 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || |||| || || ||| || || || | | || || || || || Sbjct 599189 GACTTGTTCAATTGACGGCCACCAAAGTATTCAGAGACAAGGGACTGGATCTTGGGAATA 599130 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || || ||||| |||||||| || || || | ||||||| | |||||||||||| Sbjct 599129 CGGGTAGATCCTCCGACCAAGACAATGTCGTCGACTTTCGCAGCAGGGATCTTTGAGTCC 599070 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCAT-----ACATTTACGGAACAAGTCCATACACAGTT 7247 ||| || ||||| || || || || | | | ||| | | | | || Sbjct 599069 TTGAGTACCTTGTCGACGGGCTCAATGGTGGACTTGAAGGCAAC--GGCGTTG---ATTT 599015 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 |||| ||||| || ||||| ||| | | ||| ||| || | ||| | || || | Sbjct 599014 CCTCGAAACGGGCTCGGGTGATGTTGGCGTTGAAGTCAGTTCCCTGGTAGAGGGAGTCGA 598955 Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367 || | || || || | |||||| | |||||||| || |||||||| || | Sbjct 598954 CCTCGACAGTGGTCTGAGTGACCGAAGAGAGAGTTCGCTTCGCTCGCTCACAAGCAGACT 598895 Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT 7427 | ||| | | |||||| |||| |||| || || | |||| || || || |||| Sbjct 598894 TGAGACGTCTGATGGCACGGGGGTCCTCGGAGATGTCGTGCTTAGTCTTGCGCTTGAACT 598835 Query 7428 CTTCAGAGAAGTG-TCGAAGGAGTC-TCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 | | |||||| |||| | | | | ||||| ||||||||||| | || || || Sbjct 598834 CGGCCTTGAAGTGCTCGAGCAAAGCGTTG--TCGAAGTCTTCACCACCGAGATGGGTGTC 598777 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCT--CCTTCAATGTTTAACAACGAAACATCA 7543 || || || || ||||| |||| ||| || | ||| | | || ||||| Sbjct 598776 TCCGGCAGTGGCCTTGACGGAGAAGA--CCTTACCCTGGATGGAAAGGAGAGACACATCG 598719 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTG---TTCTT 7599 || ||||||||||||| ||| || ||||| ||||| ||| || || ||| |||| Sbjct 598718 AAAGTACCACCACCCAAGTCGAAGATGAGAACGTT----TCGCTCCTCCTTGGACTTCTC 598663 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 || || ||||| |||||||| || || || || || || || || || || | || Sbjct 598662 GTCAAGTCCGTAAGCGATAGCAGCGGCAGTGGGCTCGTTGATGATTCGGAGGACCTCAAG 598603 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 || ||||| | | | || || || || || | || || |||||||| || ||||| || Sbjct 598602 ACCGGCAATGGCTCCGGCGTCCTTGGTGGCGAGACGCTGAGAATCGTTGAAATAGGCAGG 598543 Query 7720 GAC 7722 ||| Sbjct 598542 GAC 598540 >seq35 Length=1071374 Score = 93.3 bits (102), Expect = 5e-14 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 ||| ||| || ||||| || || ||||| || || |||| |||||| |||| ||| | Sbjct 474772 TTCGTCCAATGAGACGTTTAGCGTCAAAGACAGTATTTTCAGGGTTCTGAGCTGCTTGAT 474713 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 ||||||| |||||||| || | ||||| | |||||| || || || | ||||| | Sbjct 474712 TCTTCGCAGCGTCCCCAATCAATCGTTCCTC---TTCCGTGAATGCCACCCAGGATGGAG 474656 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 | | || || ||||||||||| || || ||||| || Sbjct 474655 TGATACGGTTTCCTTGGTCGTTGGCGATGATTTCAAC 474619 >seq33 Length=1453386 Score = 86.0 bits (94), Expect = 8e-12 Identities = 536/845 (63%), Gaps = 34/845 (4%) Strand=Plus/Minus Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929 ||||||| || ||||| || | || | | | ||||| |||| | | |||||| Sbjct 851166 CCCACATGTCAAATTGTAGTTTGCCCTCAGAGATGGGTGATCCCTCGTAAGATTCATATT 851107 Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989 |||| | | || || || ||||| | || | | || |||||||| || |||| Sbjct 851106 TCCCGTGGACCTGAGCCAGCTCGCACGAAGCCTCCAACGCGGCATGGTAGATTGTCTCGA 851047 Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAA---CATGA 105046 | || | ||||||||| | || | | ||| |||| | |||||| || ||||| Sbjct 851046 AGATCTGAATGTTGAGCTCTCGAGCGGCAGGCGAATCGAAAGGCATTCTCAAGGCCATGA 850987 Query 105047 TAAACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAAC 105106 || || || |||||||| |||||||| | |||||||||||||||||| | ||| || Sbjct 850986 -AAGCA--TCGGCGAGACCTTGAACACCCAGACCGATGGGTCTGTGACGGAAATTAGAGT 850930 Query 105107 GTTTCCCGTTTTCGGTTGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAA 105166 | | | | | ||||| |||| | ||||||| | | || ||| | Sbjct 850929 TCTGAGCCTCCTTGACGGGGTAGTAGTTGCGGTTGATAACCTGATCGAGATTCTTTGTTA 850870 Query 105167 CCATTTTCGT-AACACGATGTA-ACTCTTCATG-GTTAAACTCGTTCTTCTCGACATCAA 105223 | | ||| || | | || || | |||| | | || || ||| |||| | |||| Sbjct 850869 CAACTTTGGTGATCTCG-TGCAGTTTCTTGAAGTCGTACACCCGT--CTCTCCATGTCAA 850813 Query 105224 CGTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAA 105283 | | || | |||| || || | || || |||||| || || | | | Sbjct 850812 CAAAGGCGGGAAGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGT 850753 Query 105284 ACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCG 105343 | || | ||||| |||||||| || || || || || || || | ||| || ||||| | Sbjct 850752 ATTCAATGATTTCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGG 850693 Query 105344 ACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT 105403 |||| |||| || || ||||||||||| || || || || || || | |||| | Sbjct 850692 ACTTGGCATTTGCAGCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCT 850633 Query 105404 TAATAATTGCTTTCCA-AATCTCCGAAGCTGGTACAACTTTAG----TTGCGATACCTTC 105458 || || || ||| | | || || || | |||| | |||| |||| Sbjct 850632 CAAGGATGGCGAACCAGAGTTTCTGAGCCTTGATGGTCTTTCGGCCCTTGC-CGGCCTT- 850575 Query 105459 AGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACC--- 105515 |||||| || || || ||||||| || || | || || | ||||| Sbjct 850574 ---TTCGTAGCCTTCATAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGG 850518 Query 105516 -CTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGA 105574 | || | | ||||||| | | | ||| | ||| |||| ||| || || ||||||| Sbjct 850517 GCATT--CGG--CAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGA 850462 Query 105575 ACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACC 105632 ||| || || ||||| | ||| | || || || || |||| ||||||| | ||| Sbjct 850461 ACAGGTCGGGTATCCAGAGGGCGTAGAAAAGATCACG--GGCTCGGACCTCTTCCTTACC 850404 Query 105633 TTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGAC 105692 |||||| || | ||||| || || | | |||||||||||| || |||| ||||| Sbjct 850403 GTGATTCTTTCGCAAGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGAT 850344 Query 105693 TGCAA 105697 |||| Sbjct 850343 GGCAA 850339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132498311920