Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11 132 6e-26 seq37 89.7 6e-13 >seq11 Length=169478 Score = 132 bits (146), Expect = 6e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| |||||||| | || | || ||||| |||||||| || | ||||| | || Sbjct 24872 CTCTTCGAAGCCATTGACACCATCCCTTGTATCCAAAAGAAGGCTCAATGGGCACTCAAA 24931 Query 102150 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 ||| | | ||||| || |||| || |||||| | |||| || || ||||| Sbjct 24932 TGGATCACTGACAAACGATCGA-CCTTCGCCGAGCGATTGATCGCCTTCGCCGCCGTTGA 24990 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 ||||| |||||||||||||| || | | || | ||||| |||||| | |||||||| Sbjct 24991 AGGTATTTTCTTCTCTGGTTCGTTTGCCTCCATCTTCTGGCTTAAGAAGAGGGGTCTCAT 25050 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| |||||| ||||||||||| || |||||| | || |||||||||||| Sbjct 25051 GCCTGGTCTCACATTCTCCAACGAACTCATCTCTAGGGATGAGGGACTCCAC 25102 >seq37 Length=816703 Score = 89.7 bits (98), Expect = 6e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTAT 102241 ||||| |||| ||||| ||||| || || || ||||||||||| ||| ||| ||||| Sbjct 353453 CGACTGGTCGCTTTTGCTTGTGTGGAAGGCATATTCTTCTCTGGCAGCTT-TGCGGCTAT 353511 Query 102242 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || ||||| |||||| | ||||||||||| || | |||||||||||||| ||| Sbjct 353512 TTTCTGGCTGAAGAAGAGGGGTCTCATGCCTGGCTTGACTTTCTCCAACGAGCTCATC 353569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742105147360