Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq33 188 8e-43 seq37 95.1 1e-14 seq11 93.3 5e-14 >seq33 Length=1453386 Score = 188 bits (208), Expect = 8e-43 Identities = 612/936 (65%), Gaps = 31/936 (3%) Strand=Plus/Minus Query 110102 CATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAG 110161 |||| || ||||| |||||||| ||||| ||||| | || | |||||| ||| Sbjct 850983 CATCGGCGAGACCTTGAACACCCAGACCGATGGGTCTGTGACGGAAATTAGAGTTCTGAG 850924 Query 110162 CAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCT 110221 | | |||||||| ||||||||| ||| ||| ||| ||||||||| || ||| | Sbjct 850923 CCTCCTTGACGGGGTAGTAGTTGCGGTTGATAACCTGATCGAGATTCTTTGTTACAACTT 850864 Query 110222 TCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGG 110281 | ||||| || || ||||| | | | ||| || ||||| | | ||| | || Sbjct 850863 TGGTGATCTCGTGCAGTTTCTTGAAGTCGTACACCCGTCTCTCCATGTCAACAAAGGCGG 850804 Query 110282 GGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAA 110341 | ||||| | || || | ||||| || | |||||| | | |||||| | | Sbjct 850803 GAAGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAATGA 850744 Query 110342 TTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGG-AG 110400 |||| ||||||||||||||| ||| ||| |||| || ||| || || || |||| | Sbjct 850743 TTTCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGCAT 850684 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||||| |||||||| || |||||||| || ||||| || || ||||| | || || ||| Sbjct 850683 TTGCA-GCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGATG 850625 Query 110461 GCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT-----CCTCCTCGT 110515 || ||| | | || || || | || | | |||| ||| |||| Sbjct 850624 GCGAACCAGAGTTTCTGAGCCTTGATGGT--CTTTCG---GCCCTTGCCGGCCTTTTCGT 850570 Query 110516 A--CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573 | ||| || | | |||||||| ||| | ||||| | ||| || || || Sbjct 850569 AGCCTT--CATAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGA-CCAGGGCATT 850513 Query 110574 -GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAG 110632 | | ||||| | ||||| ||| | || | | || || | ||||||||||||||| | Sbjct 850512 CGGCAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGG 850453 Query 110633 GAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGC 110692 | ||||| | || ||||||| |||||| || ||||||| | ||| || || | Sbjct 850452 GTATCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTC 850393 Query 110693 GTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATC 110752 | | || | ||||| | || ||| | |||||| || || ||||||| || | || | Sbjct 850392 GCAAGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCAC 850333 Query 110753 CCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 | | |||| || |||||| || || || || ||||| | ||| | | || Sbjct 850332 C---AGGACGCTTGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGA 850276 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866 ||||||| | || || | || | || || ||||| ||| ||| ||||| | Sbjct 850275 GCATAGGTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTC 850216 Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCT 110925 |||||| ||| || || | || ||||| || || ||| || || || || ||| Sbjct 850215 GAATGTTGTGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCT 850156 Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTG-TTGGCAATTAGAAAGCAAGA 110984 | | || | || || || ||||| || || | || | |||| | || ||||| || Sbjct 850155 -TCAAAGTCTCGTAGATGCCGTCAATGGAGTC-GTCTCGCATGGCGACAAGGAAGCAGGA 850098 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 ||||| ||||| |||| ||||| || ||||| || Sbjct 850097 GGACATTTGAGGGTGAGGAGTTCCGGCGTTGAACAG 850062 >seq37 Length=816703 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 119513 CCCTTCATCCCGAGAGATGAGCTCATTACTGAA-GCAAAGTCCAGGCATGAGTCCTCTTT 119571 |||||||||||| ||||||||| || ||| | ||| ||||||||||| || || | Sbjct 353584 CCCTTCATCCCGGCTGATGAGCTCGTTGGAGAAAGTCAAG-CCAGGCATGAGACCCCTCT 353526 Query 119572 TCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGA 119631 |||| ||||| || || || ||| || ||||| ||||| ||||| |||||||| || | Sbjct 353525 TCTTCAGCCAGAAAATAGCCGCAAAGCTGCCAGAGAAGAATATGCCTTCCACACAAGCAA 353466 Query 119632 AAGCGA 119637 |||||| Sbjct 353465 AAGCGA 353460 >seq11 Length=169478 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/231 (70%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||||| ||||||||| || || ||| || ||||||||||| || Sbjct 25101 TGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAGACCAGGCATGAGACCC 25042 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 || ||||| ||||| ||||||| ||| ||||| ||||| || || || || | Sbjct 25041 CTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAAAATACCTTCAACGGCG 24982 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---GAACCACTTGAGAGC 119683 ||||| |||| | ||||| || |||||||| ||||| || ||| ||||| || Sbjct 24981 GCGAAGGCGATCAATCGCTCGGC-GAAGGTCGATCGTTTGTCAGTGATCCATTTGAGTGC 24923 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||| | ||||| | || || |||| || | ||||||||||| || Sbjct 24922 CCATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCTTCGAAGAG 24872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975720236400