Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq33 208 9e-49 seq11 104 3e-17 >seq33 Length=1453386 Score = 208 bits (230), Expect = 9e-49 Identities = 613/933 (66%), Gaps = 25/933 (3%) Strand=Plus/Minus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| ||||||||||||||||||| ||| || |||||||| || | |||||| || | | Sbjct 850983 CATCGGCGAGACCTTGAACACCCAGACCGATGGGTCTGTGACGGAAATTAGAGTTCTGAG 850924 Query 106338 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 106397 | || ||||| || | || | || || || | | ||||| || || |||| | Sbjct 850923 CCTCCTTGACGGGGTAGTAGTTGCGGTTGATAACCTGATCGAGATTCTTTGTTACAACTT 850864 Query 106398 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATACTT 106455 | ||||| || || ||||| | | || | || ||||| ||| ||| | Sbjct 850863 TGGTGATCTCGTGCAGTTTCTTGAAGTCGTACACCCG--TCTCTCCATGTCAACAAAGGC 850806 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||||| |||| || ||||| ||||| || || ||| || | | | ||| || | Sbjct 850805 GGGAAGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAAT 850746 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT-TT 106574 ||||| ||||||||||||||| ||| || || |||| | ||||||||| ||| Sbjct 850745 GATTTCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGC 850686 Query 106575 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAA 106634 ||||| ||||||||||| ||||||||||| || || ||||| ||||| | || || | Sbjct 850685 ATTTGCA-GCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGA 850627 Query 106635 TTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTCG 106690 | || ||| | || | | || | |||| || ||||| | || || ||| Sbjct 850626 TGGCGAACCAGAGTTTCTGAGCCTTG----ATGGTCTTTCGGCCCTTGCCGGCCTTTTCG 850571 Query 106691 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT- 106749 || | ||||| |||||||| || | || | |||| |||||| || || || Sbjct 850570 TAGCCTTCATAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGG-GCATTC 850512 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 | | ||||| | || | ||| | ||| | | || || ||||||||||| ||||| || Sbjct 850511 GGCAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGG 850452 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 ||||| |||| | || ||||| | || ||||||| | ||| || || ||| Sbjct 850451 TATCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCG 850392 Query 106870 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 106929 || || ||||| || | || ||| |||||||| ||||| ||||||| || | | || Sbjct 850391 CAAGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACC 850332 Query 106930 CTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983 ||||| ||| | || | || || || || ||||||| ||| | || || Sbjct 850331 ---AGGACGCTTGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAG 850275 Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 107043 ||| || | ||||| | || | || || || || ||| || ||||||| Sbjct 850274 CATAGGTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCG 850215 Query 107044 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 107103 | | || ||||| | || ||||| || || ||| ||||| || || || | | Sbjct 850214 AATGTTGTGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTT 850155 Query 107104 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 107163 | ||| | ||||| |||| || ||||| || |||||| ||||||||| ||| Sbjct 850154 CAAAGTCTCGTAGATGCCGTCAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGGA 850095 Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196 ||| || || || || || || ||||| || Sbjct 850094 CATTTGAGGGTGAGGAGTTCCGGCGTTGAACAG 850062 >seq11 Length=169478 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| |||||||| | || || ||||| || ||||| || || ||||||||||| Sbjct 25102 GTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAGACCAGGCATGAGACC 25043 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || |||||| | ||| | || | | || || || |||||||| ||||| || || Sbjct 25042 CCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAAAATACCTTCAACGGC 24983 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT--GTCAAACCATTTCATT 117462 || || || | | ||||||||||||| ||| ||||| || | |||||| | | Sbjct 24982 GGCGAAGGCGATCAATCGCTCGGCGAAGG-TCGATCGTTTGTCAGT-GATCCATTTGAGT 24925 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||||||| |||||||| | ||||| || | || | |||||||| || Sbjct 24924 GCCCATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCTTCGAA 24875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980519759120