Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12 134 3e-26 seq36 116 8e-21 seq11 111 3e-19 seq33 107 4e-18 >seq12 Length=1921170 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || ||||||||||| ||||| || || || ||||| |||| ||||||| || Sbjct 1262039 TCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGTCC 1262098 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| | |||||| || || ||||| | ||||||||| || || ||||| ||||| || Sbjct 1262099 ATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGGGGGAATTCCTTCCTT 1262158 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||| || || || |||||| || || || ||||| || ||| || || || || | Sbjct 1262159 GTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGATTCAACCTCGAGCGTGAT 1262218 Query 195105 CGTCTTTCCTGT 195116 ||||| || || Sbjct 1262219 GGTCTTGCCCGT 1262230 >seq36 Length=922397 Score = 116 bits (128), Expect = 8e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| |||| |||||||| || ||||| | |||||| || ||||| || | ||| |||| Sbjct 24905 TGTAGTCGGAAAGAGTTCGTCCGTCTTCCAACTGCTTTCCAGCGAAAATCAATCGCTGTT 24964 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| |||||||| ||||| ||||| || || || |||||| || || || ||||| | Sbjct 24965 GGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGG 25024 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||||||||| | ||||| || || Sbjct 25025 AAGACTCGACTTCAAGGGTGATGGTCTTACCCGT 25058 >seq11 Length=169478 Score = 111 bits (122), Expect = 3e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 ||||||||| ||||||| ||||| || |||||||| || ||||| || | ||||||| Sbjct 10512 TGTAATCGGACAGAGTTCGACCATCCTCAAGCTGCTTTCCCGCGAAAATCAAACGTTGTT 10571 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| || ||||| || || ||||| || || || ||||||||| ||||| || || | Sbjct 10572 GGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTATCAG 10631 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || ||||| |||| ||||| || || Sbjct 10632 ATGATTCGACCTCAAGAGTAATAGTCTTCCCGGT 10665 Score = 111 bits (122), Expect = 3e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| |||| ||||||| || || || |||||||| || || ||||| | || ||| | Sbjct 10826 TGTAGTCGGACAGAGTTCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATCAATCTTTGCT 10885 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 | || || |||||||||||||||||||| || || |||||||| |||||||| |||| Sbjct 10886 GATCAGGGGGAATGCCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATGGTATCCG 10945 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || || || ||||| | |||||||| || Sbjct 10946 AGGACTCGACCTCGAGGGTGATAGTCTTTCCGGT 10979 Score = 109 bits (120), Expect = 1e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || | |||||||||||||| |||||||| || | ||||||| ||||| Sbjct 9651 CAAGACAAGATGCAAGGTGGACTCTTTTTGGATATTGTAGTCTGAGAGAGTTCGTCCATC 9710 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||| |||||||| || ||||| || | ||||||||| || ||||| ||||| ||| Sbjct 9711 TTCCAGCTGCTTTCCGGCGAAAATCAATCGTTGTTGATCAGGAGGGATGCCCTCT 9765 >seq33 Length=1453386 Score = 107 bits (118), Expect = 4e-18 Identities = 222/325 (68%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 160513 CTGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAA-AAGCCCGGAGGTGATGACCT 160569 |||||||| || |||||||||| |||| ||||||| || | ||| || || Sbjct 850358 CTGGCACGCCGATGTCTTTGACTTCCTCGACTTGCGAAAGAATCACGGTAAGGAAGA--- 850414 Query 160570 GATGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGT 160629 | | ||||| | || ||||||||||| |||||| |||| || ||||||||| |||| Sbjct 850415 GGTCCGAGCCCGTGATCTTTTCTACGCCCTCTGGATACCCGACCTGTTCATGAAGCGAGT 850474 Query 160630 GAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGT 160689 ||| | | || || |||| ||| | ||||| ||| ||||| || | ||||| Sbjct 850475 CGAAGCCGACGGTGACTGGACCCTCATGTGTCCTGCCGAATGCCCTGGTCTCGCCGATGT 850534 Query 160690 TTATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAG-AGGGAAGAGCCAAAA 160748 |||| |||| || || | || |||||| | |||||||| | || ||| ||| || Sbjct 850535 CCATGGAGCCGAATTTGAAGCACTCTATGAAGGCTACGAAAAGGCCGGCAAGGGCC-GAA 850593 Query 160749 AGGTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTA 160808 || | | ||||| || |||| ||| |||||||| ||||| |||| |||| Sbjct 850594 AGACCATCAAGGCTCAGAAACTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACCGGTA 850653 Query 160809 TGCCCTTTATCGCATACAAGGATGC 160833 |||| || ||||||||||| Sbjct 850654 CTCCCTACATGCTTTACAAGGATGC 850678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481059821146