Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 2e-15 >seq11 Length=169478 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | |||||| | ||||| || | || || ||||| ||||| ||||| || Sbjct 9958 CCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAG 10017 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| |||| || || ||||| ||||| || || ||||| || || || | || Sbjct 10018 AGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGA 10077 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||||||||| |||||| ||| || || | ||||| || | ||| Sbjct 10078 ATACCCTCCTTGTCCTGAATCTTGCTTTTCAC--AT--TGTCGATGGTGTCGGATGACTC 10133 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | || ||||| || || || | ||||||||||||||||||||| Sbjct 10134 AACTTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 10185 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| ||||| | || || || ||||| || || || Sbjct 10221 TTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAA 10280 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| || || || | || | ||||||||||| |||||| || ||| Sbjct 10281 AATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 10340 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || || ||| || |||| ||| |||||||| || || | |||||| || Sbjct 10341 GTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGAC 10400 Query 34970 AAAGATCTGCATA 34982 ||||| |||||| Sbjct 10401 GAAGATTTGCATA 10413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633449654064