Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 9e-15 >seq11 Length=169478 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| | ||| ||| || || || ||||| || || || | || | || || Sbjct 9975 CACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTC 10034 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | || |||||||| || || |||||||||||||| | |||| ||||||||||| Sbjct 10035 GAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTG 10094 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| ||| ||| | | | || || | ||| || |||| || || || || Sbjct 10095 AATCTTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTCTT 10154 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 10155 GCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937423578274