Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq33 273 4e-68 seq11 118 2e-21 seq37 109 1e-18 >seq33 Length=1453386 Score = 273 bits (302), Expect = 4e-68 Identities = 661/989 (67%), Gaps = 34/989 (3%) Strand=Plus/Minus Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 ||||||||||| || |||| || || || | |||||| || || || |||| ||||| Sbjct 851092 GCCAGCTCGCACGAAGCCTCCAACGCGGCATGGTAGATTGTCTCGAAGATCTGAATGTTG 851033 Query 213252 AGCTTCTTG-GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAG 213310 |||| || | || | || || ||| ||||| ||| | ||| |||| || || Sbjct 851032 AGCT-CTCGAGCGGCAGGCGAATCGAAAGGCATTCTCAAGGCCATGAAAGCATCGGCGAG 850974 Query 213311 CCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCA 213369 || || || || | |||||||||||||| | | ||||| || |||| ||||| | Sbjct 850973 ACCTTGAACACCCAGACCGATGGGTCTGTGACGGAAATTAGAGTTCTGAGC-CTCCTTGA 850915 Query 213370 AGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACAT 213429 |||||| |||||| || ||| | || | ||| || || | |||||||||| | Sbjct 850914 CGGGGTAGTAGTTGCGGTTGATAACCTGATCGAGATTCTTTGTTACAACTTTGGTGATCT 850855 Query 213430 GGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTC-CTGCA------CAAACTCAGGC 213482 | ||| | || |||| |||| | |||||| || || |||| | || Sbjct 850854 CGTGCAGTTTCT------TGAAGTCGTA-CACCCGTCTCTCCATGTCAACAAAGGCGGGA 850802 Query 213483 AGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATC 213542 || |||| ||||| |||||| ||||| ||||| | || | | ||| || ||||| Sbjct 850801 AGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAATGATT 850742 Query 213543 TCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTG 213602 ||||| |||| |||| | |||||| ||||||| || ||||| ||||| || || Sbjct 850741 TCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGCATTT 850682 Query 213603 GCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGG 213662 |||| ||||||||| ||||||||||| | |||||||| ||||| | | || || | Sbjct 850681 GCAGCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGATGGCG 850622 Query 213663 CTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCC---TCGTAC 213719 |||||| | | ||||||| | || | || | | || ||| ||||| Sbjct 850621 AACCAGAGTTTCTGAGCCTTGA----TGGTCTTTCGGCCCTTGCCG--GCCTTTTCGTAG 850568 Query 213720 TGTTCGTAGAGCTCGTTGAATTCGTGGCCCCA--GACCCTGTCCAGTCCCGGACAGGATG 213777 ||| ||||| | | ||||| ||| ||| ||| | | || || || || | Sbjct 850567 CCTTCATAGAGTGCTTCAAATTC--GGCTCCATGGACATCGGCGAGACCAGGGCATTCGG 850510 Query 213778 CGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 | |||||||||||| ||||||| ||||| || ||||| || |||||||||||| || | Sbjct 850509 CAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTA 850450 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||| || ||| ||| || || | || | ||| ||| || || || |||| Sbjct 850449 TCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCA 850390 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 || || |||||||||| || |||||||| ||||| | |||||||||||||| || | Sbjct 850389 AGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACCAG 850330 Query 213958 GCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014 | | |||| || |||||||| || | || || ||| || || | | Sbjct 850329 GACGCTTGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATAG 850270 Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074 |||| | ||||| || | ||||||||| || || || || ||||| ||| | | || Sbjct 850269 GTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATGT 850210 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 || ||| || || || || ||||| |||||||||| |||||| | ||| || Sbjct 850209 TGTGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTCAAAG 850150 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCT 214163 |||| ||||||| | ||| ||| ||| Sbjct 850149 TCTCGTAGATGCCGTCAATGGAGTCGTCT 850121 >seq11 Length=169478 Score = 118 bits (130), Expect = 2e-21 Identities = 176/248 (71%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| || ||||| |||| | || || |||| |||||| |||||||||| ||| Sbjct 25117 GCAAGCGAAGTCGGTGTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAG 25058 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||||||||||| ||||||| || |||||||| || | || || || ||||||||||| Sbjct 25057 ACCAGGCATGAGACCCCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAA 24998 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG--AAGCGTTCTTGTCT 48307 || || || || || ||||| ||| | | | ||| |||| | | ||| ||||| Sbjct 24997 AATACCTTCAACGGCGGCGAAGGCGATCAATCGCTCGGCGAAGGTCGATCGT--TTGTCA 24940 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC 48367 | |||||| || ||||| | |||||||| | ||| || || || || || ||||| Sbjct 24939 GTGATCCATTTGAGTGCCCATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCT 24880 Query 48368 CGGAAGAG 48375 |||||| Sbjct 24879 TCGAAGAG 24872 >seq37 Length=816703 Score = 109 bits (120), Expect = 1e-18 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48152 CCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGT 48211 ||||| ||||||||||||||| |||||||||| | |||||||||| ||||||| Sbjct 353583 CCTTCATCCCGGCTGATGAGCTCGTTGGAGAAAGTCAAGCCAGGCATGAGACCCCTCTTC 353524 Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || ||||||||||| ||||| || |||||||||||| ||||| ||||| Sbjct 353523 TTCAGCCAGAAAATAGCCGCAAAGCTGCCAGAGAAGAATATGCCTTCCAC 353474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532357521920