Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11 122 2e-22 seq37 91.5 3e-13 >seq11 Length=169478 Score = 122 bits (134), Expect = 2e-22 Identities = 225/327 (69%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||| || ||| || | ||| | | |||||| | ||||| | || ||||||| | Sbjct 24881 GCCATTGACACCATCCCTTGTATCCAAAAGAAGGCTCAATGGGCACTCAAATGGATCA-C 24939 Query 25855 AGCCAGA-GCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 | || | | | || || | |||||| || | ||||| || || || || || || || Sbjct 24940 TGACAAACGATCGACCTTCGCCGAGCGATTGATCGCCTTCGCCGCCGTTGAAGGTATTTT 24999 Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCT 25973 ||| ||||||||||| ||||||||||||| ||| ||| ||| |||||| || || Sbjct 25000 CTTCTCTGGTTCGTTTGCCTCCATCTTCTGGCTTAAGAAGAGGGGTCTCATGCCTGGTCT 25059 Query 25974 GTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 || |||||||| |||||| ||||| ||||| ||||||| || || || ||||| Sbjct 25060 CACATTCTCCAACGAACTCATCTCTAGGGATGAGGGACTCCACACCGACTTCGCTTGCCT 25119 Query 26034 GCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAA 26093 || | ||| |||| || | ||| | ||||| ||| | | |||||| Sbjct 25120 CCTGTTCAC---CCACCTGAGGAGGAGACCGCACCCTGAGACTGTCGAGCGGATCATCCG 25176 Query 26094 AGAGGCTGTGGAGATCGAGAAGGAGTT 26120 |||||| || |||| ||| ||||||| Sbjct 25177 AGAGGCCGTCAAGATTGAGCAGGAGTT 25203 >seq37 Length=816703 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || ||||| || |||||| |||||| ||||| || ||| || |||||||| || Sbjct 353453 CGACTGGTCGCTTTTGCTTGTGTGGAAGGCATATTCTTCTCTGGCAGCTTTGCGGCTATT 353512 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAG 25997 |||||||| ||| ||| ||| |||||| || || ||||| ||||||||||||||||| Sbjct 353513 TTCTGGCTGAAGAAGAGGGGTCTCATGCCTGGCTTG-ACTTTCTCCAACGAGCTCATCAG 353571 Query 25998 CAGGGACGAGGG 26009 | |||| || || Sbjct 353572 CCGGGATGAAGG 353583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844358798720