Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq11 107 1e-17 seq38 98.7 6e-15 seq12 93.3 3e-13 >seq11 Length=169478 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || |||||||| || ||| || | || || || | || || Sbjct 10191 ACGGAGACGAAGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGT 10250 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||||| ||||| || ||||| ||||| || || ||||||||||||||||| || Sbjct 10251 TCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACC 10310 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| |||||||| || || ||||| ||||| | | ||| || Sbjct 10311 CTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGACTTCGAG 10370 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||| ||||| | |||||| ||||| ||||| Sbjct 10371 GGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATTTG 10409 >seq38 Length=784392 Score = 98.7 bits (108), Expect = 6e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 ||||||| ||||| || ||||||||||| ||| || |||| |||||||| ||||||||| Sbjct 317159 GACGTCTGAGAACCGCCTGTGAACGTGCGAAGAGAACTCTGTCTTCTGCCGCTCAAACTA 317100 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | ||||| |||| ||||| || || || ||||| | | | ||| || || | ||| Sbjct 317099 CCATTGAAATTGACTCTCTCTTCGATGGTATTGACTTTTACACTTCCATCACCCGTGCTC 317040 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 ||| || || |||| || ||||| || || || || || || || | |||| Sbjct 317039 GATTCGAGGAACTTTGCCAGGACCTCTTCCGATCCACCATGGAGCCTGTCGAGAAGGTTC 316980 Query 475665 TCAGAGATTCTAAACTTGACAA 475686 || | || |||| | ||||| Sbjct 316979 TCCGTGACGCTAAGATGGACAA 316958 >seq12 Length=1921170 Score = 93.3 bits (102), Expect = 3e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| |||||| | |||||||||||||| || | |||||||||||||| ||| Sbjct 1262088 AGAGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGGGGGA 1262147 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||||||||||||| || ||||| |||||| || ||||| |||| Sbjct 1262148 ATTCCTTCCTTGTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAG 1262196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177569995624