Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq11 111 3e-19 seq12 102 2e-16 >seq11 Length=169478 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| || |||| ||| || ||| || || || || | ||| ||| |||| || Sbjct 9976 ACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTCG 10035 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | ||||||||| || || || | || |||||||||||| || || || || || || || Sbjct 10036 AGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGA 10095 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || |||| ||||| || | || || || || ||||| | ||| ||||| || Sbjct 10096 ATCTTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTCTTG 10155 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || | ||| |||||||| Sbjct 10156 CCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | || | || || ||| || || || Sbjct 10183 ATACCACCACGGAGACGAAGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG 10242 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||||| | || || | |||||||||||| || || | || |||||||||||| Sbjct 10243 GAGAGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGA 10302 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || | || || || || | ||| || || || Sbjct 10303 GGAATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCG 10362 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||| || || || || || | || || ||||| Sbjct 10363 ACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 >seq12 Length=1921170 Score = 102 bits (112), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 192339 AGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 ||||| ||| || ||| || || || || | |||||| |||| ||||| || || || Sbjct 1262057 AGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGTCCATCTTCCAACTGCTTTCC 1262116 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458 ||||||||| |||| ||||||||||| || |||||||| || || || || ||| || Sbjct 1262117 AGCAAAGATCAATCGTTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTT 1262176 Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||| |||| || || ||||| || || || || ||||| || || || Sbjct 1262177 GACATTGTCGATAGTGTCAGAGGATTCAACCTCGAGCGTGATGGTCTTGCCCGT 1262230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479520681300