Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 2e-14 >seq11 Length=169478 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 171908 TCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCC 171967 |||| |||| || | |||||||||||| ||||| | || |||||| ||||| || || || Sbjct 10251 TCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACC 10310 Query 171968 TTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAG 172027 || || || || || || | || || || || ||||| || || || ||||| || Sbjct 10311 CTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGACTTCGAG 10370 Query 172028 AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || || || || | ||| || ||||| Sbjct 10371 GGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| | || |||| || || ||||| || || || | ||| ||||| ||||| || ||| Sbjct 9430 CGTCCATCTTCCAGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCT 9489 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 || || || || || ||| ||| ||||| ||||||||||| ||||| ||||| || Sbjct 9490 TCCTTGTCCTGGATCTTAGATTTGACATTGTCGATAGTATCTGAGGATTCGACTTCGAGG 9549 Query 172029 GTAATGGTTTTACCAGT 172045 || || || |||||||| Sbjct 9550 GTGATCGTCTTACCAGT 9566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135570060400