Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 116 1e-20 seq11 98.7 3e-15 >seq9 Length=340098 Score = 116 bits (128), Expect = 1e-20 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC---GCAATTGCAAAT 289092 || |||||||| || |||||||| | |||||| | |||| || ||| | || || Sbjct 216846 GCGTCAATTTCATCGATGAAAATGATACACGGGG---TTTGCTTCTTGGCATTCGCGAAC 216790 Query 289093 AATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGAT 289152 || ||||| || || |||| ||||| ||| ||| ||||||| |||||||| || | ||| Sbjct 216789 AAGTCTCTAACTCGAGATGGTCCAACACCGACAAACATTTCGACAAATTCGGATCCAGAT 216730 Query 289153 ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCT 289212 ||| | ||| | ||| ||||||||||| ||| | |||| ||| || |||||| Sbjct 216729 ACTGACAAGAAGGGAACACCGGCTTCGCCTGCAGTCGCCTTGGCCAAAAGGGTTTTACCT 216670 Query 289213 GTTCCAGGTGGTCC 289226 |||||||| ||||| Sbjct 216669 GTTCCAGGGGGTCC 216656 >seq11 Length=169478 Score = 98.7 bits (108), Expect = 3e-15 Identities = 213/316 (67%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 133342 GGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGT 133401 ||| || ||||| ||| || || || || || || || ||||||||||| || Sbjct 24799 GGAGAACATCCACTCTGAAACCTACTCCCTCCTCATCGACACCTACATCAAAGACGCCAA 24858 Query 133402 CCAGAAGCACA-AACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTG 133460 ||| ||||| || ||| | |||||| | | |||||||| ||||||| || Sbjct 24859 CCA-CCGCACATTCCTCTTCGAAGCCATTGACACCATCCCTTGTATCCAAAAGAAGGCTC 24917 Query 133461 ACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTT 133520 | ||||| | ||||||||| ||||| || ||| || || || | | || | Sbjct 24918 AATGGGCACTCAAATGGATCACTGACAAACGATCGACCTTCGCCGAGCGATTGATCGCCT 24977 Query 133521 TTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAA 133580 | || | || || || ||||| ||| |||| |||| ||| || || |||||||| | Sbjct 24978 TCGCCGCCGTTGAAGGTATTTTCTTCTCTGGTTCGTTTGCCTCCATCTTCTGGCTTAAGA 25037 Query 133581 AGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCAC 133640 || | ||| | | ||||| || || || |||||||| || || ||||| |||| || Sbjct 25038 AGAGGGGTCTCATGCCTGGTCTCACATTCTCCAACGAACTCATCTCTAGGGATGAGGGAC 25097 Query 133641 TTCACACCGAATTTGC 133656 | |||||||| || || Sbjct 25098 TCCACACCGACTTCGC 25113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816883408806