Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq12 123 2e-23 seq11 98.7 9e-16 >seq12 Length=1921170 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || || || || || |||||||| || ||| || | ||||| | || | || || Sbjct 1262233 CTCACGGGCAAGACCATCACGCTCGAGGTTGAATCCTCTGACACTATCGACAATGTCAAG 1262174 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||| ||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct 1262173 TCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAACAACGATTGATCTTTGCTGGA 1262114 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || ||| |||| ||| ||| | || || || ||||| || ||||| || || || Sbjct 1262113 AAGCAGTTGGAAGATGGACGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTT 1262054 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| | || ||| ||||||| ||||| Sbjct 1262053 CACCTCGTCTTGAGATTGCGAGGAGG 1262028 >seq11 Length=169478 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || | ||||| || | || Sbjct 10184 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAAGTTGAGTCATCC 10125 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| || ||||| || || || ||||| |||||| Sbjct 10124 GACACCATCGACAATGTGAAAAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10065 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || || | || || ||||| ||||| || ||||| | || ||| | || || || || Sbjct 10064 CAGCGACTCATTTTCGCCGGTAAACAACTCGAGGA-TGGACGTACACTCTCCGACTACAA 10006 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || | || |||||| | | ||||| ||||| Sbjct 10005 CATCCAGAAGGAGTCTACGTTGCATTTGGTGCTCAGGTTGCGAGGAGG 9958 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || ||||| || ||||| || ||||| || || || | || || | || | || ||| Sbjct 10982 CTTACCGGAAAGACTATCACCCTCGAGGTCGAGTCCTCGGATACCATTGACAACGTCAAA 10923 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||||||||||||||| || || || ||||| ||| | ||||||||||| || Sbjct 10922 TCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGATCAGCAAAGATTGATCTTTGCTGGA 10863 Query 24845 AAACAGCTGGAGGA 24858 || ||||| ||||| Sbjct 10862 AAGCAGCTTGAGGA 10849 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || ||||| || |||||||| || || || ||| | | || || | || | || || Sbjct 10668 CTCACCGGGAAGACTATTACTCTTGAGGTCGAATCATCTGATACGATTGACAACGTCAAG 10609 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||| ||||| || ||||| || || || |||||||||||||| || || || Sbjct 10608 TCGAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAACAACGTTTGATTTTCGCGGGA 10549 Query 24845 AAACAGCTGGAGGAT 24859 || ||||| |||||| Sbjct 10548 AAGCAGCTTGAGGAT 10534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897386298640