Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq33 136 6e-26 seq11 87.8 3e-11 >seq33 Length=1453386 Score = 136 bits (150), Expect = 6e-26 Identities = 182/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || ||| ||| |||| | |||||||| || || | ||||| || Sbjct 850313 CTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATAGGTACGATACCGTTCGA 850254 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||| || || | ||||| |||| ||| || | ||||| | || || Sbjct 850253 GTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATGTTGTGAATGTGAAGTCC 850194 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || ||||| | ||||||||| | ||||| | |||| |||||||||||||| || Sbjct 850193 GATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTCAAAGTCTCGTAGATGCCGTC 850134 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||||| | |||| | | || ||||| || || |||| ||| | | || || Sbjct 850133 AATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGGACATTTGAGGGTGAGGAGTTCC 850074 Query 2073780 GGCATTGAAGAGC 2073792 ||| ||||| ||| Sbjct 850073 GGCGTTGAACAGC 850061 Score = 114 bits (126), Expect = 2e-19 Identities = 276/417 (66%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 2071585 TCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTG--CTGGTCAGGT 2071642 ||||| |||| ||||| ||| | |||| ||||||| || |||||| || | || | Sbjct 850741 TCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGCAT-T 850683 Query 2071643 TGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGG 2071702 || | || ||||||| ||||||||||| | ||| |||||| |||| ||| | ||||| Sbjct 850682 TG-CAGCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGATGG 850624 Query 2071703 CCGACCAAATTTGGCGCGCGGGCACCGA-----GGTCCTCGCGCGGCCCTNNNNNNNNNN 2071757 | |||| | || | || | | || ||| || ||||| | Sbjct 850623 CGAACCAGAGTTTCTGAGCCTTGATGGTCTTTCGGCCCTTGC-CGGCCTTTTCGTAGCCT 850565 Query 2071758 NNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGA 2071817 |||| || ||||| |||| || ||| ||| || || || |||| Sbjct 850564 TCAT----AGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGGGCATTCGGC 850509 Query 2071818 CGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGT 2071877 || || | ||| | |||||| ||| | | | || || ||| ||||||||| | Sbjct 850508 AGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTAT 850449 Query 2071878 CCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAG 2071937 ||| ||| |||| || ||||| || || ||| ||| ||||| ||||| |||||| || Sbjct 850448 CCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCAA 850389 Query 2071938 GTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 |||||| |||| | || ||||||||||| ||||| || ||| ||||||||| || Sbjct 850388 GTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACC 850332 >seq11 Length=169478 Score = 87.8 bits (96), Expect = 3e-11 Identities = 109/148 (74%), Gaps = 11/148 (7%) Strand=Plus/Minus Query 796216 GCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC---GAG 796272 |||||||||||||| | |||| ||| || ||||| |||||| | |||| ||||| | Sbjct 24607 GCGGCGAAAAAGGCCAAGACGCGCTCGACAAAGTAACGCTCATTGTCGTTGAGCTTGGTT 24548 Query 796273 ACCCAGTGGACCGTG----TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 |||||| |||| || | | |||||| || |||||||||||||| ||| || Sbjct 24547 TCCCAGT----CGTGAAGATCAGGGGCGAGGTTGATTTCCTCGGCGGTCCAGAAGCTCGC 24492 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATC 796356 || ||||| |||||||| | ||| ||| Sbjct 24491 CTGAGCCTTCTTGTACATTTGCCAAATC 24464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242357766682