Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq11 150 4e-31 seq12 131 3e-25 >seq11 Length=169478 Score = 150 bits (166), Expect = 4e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| ||| | || || || |||| ||||| || ||||| || || || || | Sbjct 9956 TACCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGG 10015 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || |||||||| || || || || |||| |||||||| |||| Sbjct 10016 AGAGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAG 10075 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || |||||||| |||||| ||||| || || || || | || Sbjct 10076 GAATACCCTCCTTGTCCTGAATCTT-GCTTTTCACATTGTCGATGGTGTCGGATGACTCA 10134 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || |||||||| ||||| ||||| ||||| |||||||| Sbjct 10135 ACTTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 96.9 bits (106), Expect = 7e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || || || ||| ||| |||||| || || || |||||||||||||| | |||||| ||| Sbjct 10828 TAGTCGGACAGAGTTCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATCAATCTTTGCTGA 10887 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || || || || ||||| || ||||| ||||| | ||| || || ||||| ||||| Sbjct 10888 TCAGGGGGAATGCCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATGGTATC 10943 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 ||||| || ||| ||| ||| || || || || ||||| || || || | | |||||| Sbjct 10514 TAATCGGACAGAGTTCGACCATCCTCAAGCTGCTTTCCCGCGAAAATCAAACGTTGTTGG 10573 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 || || || ||||| ||||| || || ||||| | || || || |||||||||||| Sbjct 10574 TCAGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTATCAGAT 10633 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 | ||| || || | ||| || ||||| || || Sbjct 10634 GATTCGACCTCAAGAGTAATAGTCTTCCCGGT 10665 >seq12 Length=1921170 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| ||| | || || | ||| |||||||| || ||||| || || || || | Sbjct 1262026 TACCTCCTCGCAATCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 1262085 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| || ||||| | || |||||||||||||| | || ||||||||| || | Sbjct 1262086 AGAGAGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGGGG 1262145 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| | || ||||| || || || ||| | ||| | Sbjct 1262146 GAATTCCTTCCTTGTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGATTCAA 1262205 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | || || |||||||| || Sbjct 1262206 CCTCGAGCGTGATGGTCTTGCCCGT 1262230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826721972882