Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq12 132 1e-25 seq11 93.3 1e-13 >seq12 Length=1921170 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 ||||| || || || ||||| | || || ||| |||||||| |||| || ||| Sbjct 1262233 CTCACGGGCAAGACCATCACGCTCGAGGTTGAATCCTCTGACACTATCGACAATGTCAAG 1262174 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||| || || || ||||||||| || || ||| || | ||||| || ||| Sbjct 1262173 TCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAACAACGATTGATCTTTGCTGGA 1262114 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 |||||||||||||||||| | ||| | |||| |||||| ||||||| |||||||||||| Sbjct 1262113 AAGCAGTTGGAAGATGGACGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTT 1262054 Query 206371 CACCTTGTTTTGAGACTTCGA 206391 ||||| || |||||| | ||| Sbjct 1262053 CACCTCGTCTTGAGATTGCGA 1262033 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| | |||||| || ||||||||||||||||| ||||||| || ||||| | | ||| Sbjct 1262033 TCGCAATCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 1262092 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| ||||||||| || ||||| | ||||||||| Sbjct 1262093 TCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGA 1262138 >seq11 Length=169478 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| || | ||| ||||| || | || |||||||| |||| ||| ||||| | | ||| Sbjct 9642 TCGCAGACGCAAGACAAGATGCAAGGTGGACTCTTTTTGGATATTGTAGTCTGAGAGAGT 9701 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||||||||||||| || | ||||||||| Sbjct 9702 TCGTCCATCTTCCAGCTGCTTTCCGGCGAAAATCAATCGTTGTTGA 9747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820224600998