Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 >seq11 Length=169478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||| || || || |||||||||||| | ||| || ||||| Sbjct 10203 AACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTC 10262 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| |||||||| | | || || ||||||||||| ||||| || || || || || Sbjct 10263 GAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTG 10322 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || |||| | || | ||||||| | ||| ||||||| || | ||||| Sbjct 10323 AATCTTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTTTT 10382 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||| || | ||| || ||||| Sbjct 10383 GCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| || || |||||||||||| | ||||| ||| ||| Sbjct 9976 ACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTCG 10035 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||||| | || || ||||||||||| ||||| || || || || || | Sbjct 10036 AGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGA 10095 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||||| | || | || |||| | ||| ||||| | || | || || Sbjct 10096 ATCTTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTCTTG 10155 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | || |||||||| Sbjct 10156 CCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610973609680