Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq11 125 7e-24 seq12 98.7 1e-15 >seq11 Length=169478 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || |||||||| || |||||||||||| Sbjct 10186 CCACCACGGAGACGAAGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 10245 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| ||||| ||||| || || ||||| | ||||| ||||| || || Sbjct 10246 AGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGA 10305 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || ||| | || ||||| || || || Sbjct 10306 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGACT 10365 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||| ||||| ||||| || ||||| |||||||| Sbjct 10366 TCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| | || || |||||||| ||||||||||| | Sbjct 9364 CCACCACGGAGCCGAAGCACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCACTG 9423 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || || || ||||| |||||||| ||||| || Sbjct 9424 AGCGTGCGTCCATCTTCCAGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGGG 9483 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || |||||| ||| | || || || ||||| || Sbjct 9484 ATGCCTTCCTTGTCCTGGATCTTAGATTTGACATTGTCGATAGTATCTGAGGATTCGACT 9543 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || || || ||||| || Sbjct 9544 TCGAGGGTGATCGTCTTACCAGT 9566 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 134516 CGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 ||| || ||||| || |||||||||||| | || | || ||||| ||||| || Sbjct 9987 CGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTCGAGTTGTTTACC 10046 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || ||||| | ||||| ||||| || || || || || || || ||||| || ||| Sbjct 10047 GGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTTTT 10106 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || ||| | |||||||| || || || || | ||| ||||| || || || || || Sbjct 10107 CACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTCTTGCCAGTCAAGGT 10166 Query 134696 TTTAACGAAAATTTGCAT 134713 || || || || ||||| Sbjct 10167 CTTCACAAAGATCTGCAT 10184 >seq12 Length=1921170 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 ||| | ||||||| | || ||| |||||||| || || || ||||| || ||||||||| Sbjct 1262022 GCCATACCTCCTCGCAATCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAG 1262081 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 ||| | || | || || | ||| || || ||||| ||||| || || ||||| Sbjct 1262082 TCGGAGAGAGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCA 1262141 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || || ||||| || || || || || ||||| ||| | ||||| || ||| Sbjct 1262142 GGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGAT 1262201 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || ||||| || ||||| || || || Sbjct 1262202 TCAACCTCGAGCGTGATGGTCTTGCCCGT 1262230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398159935760