Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq33 100 4e-16 >seq33 Length=1453386 Score = 100 bits (110), Expect = 4e-16 Identities = 472/759 (62%), Gaps = 53/759 (7%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| ||||| |||| ||||| | | ||||| ||||| |||||||| | | Sbjct 850553 TTCAAATTCGGCTCCATGGACATCGGCGAGACCAGGGCATTCGGCAGGACACATGAGGGT 850494 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-TATAA 69634 ||| || | || | | ||||| ||||| || || ||||| ||||| || || || || Sbjct 850493 CCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTATCCAGAGGGCGTAGAA 850434 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | ||||| | || || ||||| || || ||| ||| | ||||| || || | Sbjct 850433 A-AGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCAAGTCGAGGAAGTCAA 850375 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 | ||| | ||||| || |||||||| || || | | | || || || || ||||| | Sbjct 850374 AGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACCAGGACGCTTGTTTCCAC 850315 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 |||| || | ||| | || ||| | | || ||| ||||| || | ||||| || | Sbjct 850314 CCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATAGGTACGATACCGTTCG 850255 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 | | || || || || | ||| || || | || ||||| || ||| || | Sbjct 850254 AGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATGTTGTGAATGTGAAGTC 850195 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || ||||| || | || ||||| |||| || ||||| || || || || || | Sbjct 850194 CGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTCAAAGTCTCGTAGATGCCGT 850135 Query 69935 CTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTC 69994 | ||| || ||| |||| | ||| || ||| ||||||||| | || ||||| Sbjct 850134 CAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGGACATTTGAGGGTGAGGAGTTC 850075 Query 69995 CCGCATTAAA-------------------------------------------------T 70005 | || || || | Sbjct 850074 CGGCGTTGAACAGCTGACAATTGGGTTAGACTAGGGACTTGACTCGGCCTGACAACACTT 850015 Query 70006 AATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCT 70065 | ||| || || ||||| || || || || || | || |||||||||||||| || Sbjct 850014 ACTGTGGGCGAGGCGTGGGTAAAATATCGCTCCGACATGAGGTTGTATGTTTCAATGGCA 849955 Query 70066 GATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCG 70124 || | ||| ||| | |||||||| | || |||||||| | ||| || |||||||| Sbjct 849954 CGATCGACATCGGCACCG-TGAATTCCGACGGCCACACGCATGATCATGTGTTGAGGTCG 849896 Query 70125 TTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAA 70184 ||| || | || ||| ||| | || ||| ||| ||| ||||| || |||||||| Sbjct 849895 TTCAACAATCTTTCCATTGATTCGGAGCAAGTAGGATCGTTCAAGAGTCTTGAACCCAAA 849836 Query 70185 ATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGA 70223 || ||||| | || || | ||||| ||||| || || Sbjct 849835 GTAATTGTAGGCGAAATCACGGTCGTAGATAATGACCGA 849797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908473718320