Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq33 203 4e-47 seq11 104 3e-17 >seq33 Length=1453386 Score = 203 bits (224), Expect = 4e-47 Identities = 613/934 (66%), Gaps = 27/934 (3%) Strand=Plus/Minus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| ||||||||||||||||||| ||| || |||||||| || | |||||| || | | Sbjct 850983 CATCGGCGAGACCTTGAACACCCAGACCGATGGGTCTGTGACGGAAATTAGAGTTCTGAG 850924 Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 111170 | || ||||| || | || | || || || | | ||||| || || |||| | Sbjct 850923 CCTCCTTGACGGGGTAGTAGTTGCGGTTGATAACCTGATCGAGATTCTTTGTTACAACTT 850864 Query 111171 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATACTT 111228 | ||||| || || ||||| | | || | || ||||| ||| ||| | Sbjct 850863 TGGTGATCTCGTGCAGTTTCTTGAAGTCGTACACCCG--TCTCTCCATGTCAACAAAGGC 850806 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||||| |||| || ||||| ||||| || || ||| || | | | ||| || | Sbjct 850805 GGGAAGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAAT 850746 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT--C 111346 ||||| ||||| ||||||||| ||| || || |||| | ||||||||| ||| | Sbjct 850745 GATTTCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGC 850686 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 | ||||| ||||||||||| ||||||||||| || || ||||| ||||| | | || Sbjct 850685 AT-TTGCA-GCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGG 850628 Query 111407 ATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTC 111462 || || ||| | || | | || | |||| || ||||| | || || || Sbjct 850627 ATGGCGAACCAGAGTTTCTGAGCCTTG----ATGGTCTTTCGGCCCTTGCCGGCCTTTTC 850572 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 ||| | ||||| |||||||| || | || | |||| |||||| || || || Sbjct 850571 GTAGCCTTCATAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGG-GCATT 850513 Query 111523 -GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 | | ||||| | || | ||| | ||| | | || || ||||||||||| ||||| | Sbjct 850512 CGGCAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGG 850453 Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 | ||||| |||| | || ||||| | || ||||||| | ||| || || || Sbjct 850452 GTATCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTC 850393 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | || || ||||| || | || ||| |||||||| ||||| ||||||| || | | | Sbjct 850392 GCAAGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCAC 850333 Query 111702 CCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 | ||||| ||| | || | || || || || ||||||| ||| | || | Sbjct 850332 C---AGGACGCTTGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGA 850276 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 111815 |||| || | ||||| | || | || || || || ||| || ||||||| Sbjct 850275 GCATAGGTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTC 850216 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | || ||||| | || ||||| || || ||| ||||| || || || | Sbjct 850215 GAATGTTGTGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCT 850156 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 | | ||| | ||||| |||| || ||||| || |||||| ||||||||| || Sbjct 850155 TCAAAGTCTCGTAGATGCCGTCAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGG 850096 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 |||| || || || || || || ||||| || Sbjct 850095 ACATTTGAGGGTGAGGAGTTCCGGCGTTGAACAG 850062 >seq11 Length=169478 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| |||||||| | || || ||||| || ||||| ||||| ||||||||||| Sbjct 25102 GTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAGACCAGGCATGAGACC 25043 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || |||||| | ||| | || | | || || || |||||||| ||||| || || Sbjct 25042 CCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAAAATACCTTCAACGGC 24983 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTG 122848 || || || | | || |||||||||| ||| |||| || | |||||| | || Sbjct 24982 GGCGAAGGCGATCAATCGCTCGGCGAAGG-TCGATCGTTTGTCAGTGATCCATTTGAGTG 24924 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 |||||| |||||||| | ||||| || | || | |||||||| || Sbjct 24923 CCCATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCTTCGAA 24875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031701684800