Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq33 205 1e-47 seq11 114 2e-20 seq37 89.7 6e-13 >seq33 Length=1453386 Score = 205 bits (226), Expect = 1e-47 Identities = 611/933 (65%), Gaps = 25/933 (3%) Strand=Plus/Minus Query 118525 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAG 118584 |||| ||||||||||| ||||| || || || || | || | | |||||| ||| ||| Sbjct 850983 CATCGGCGAGACCTTGAACACCCAGACCGATGGGTCTGTGACGGAAATTAGAGTTCTGAG 850924 Query 118585 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 118644 | || ||||| || | || | | ||||||| || ||||| || || ||||| | Sbjct 850923 CCTCCTTGACGGGGTAGTAGTTGCGGTTGATAACCTGATCGAGATTCTTTGTTACAACTT 850864 Query 118645 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG--ACATACTT 118702 | ||||| || || || || | | | || | || ||||| ||| ||| | Sbjct 850863 TGGTGATCTCGTGCAGTTTCTTGAAGTCGTACACCCG--TCTCTCCATGTCAACAAAGGC 850806 Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 ||||| |||| || |||| || || || | | ||| || | ||| ||| || || Sbjct 850805 GGGAAGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAAT 850746 Query 118763 AATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 ||||| || |||||||| ||| ||| ||||| |||| || |||||| || ||||| | Sbjct 850745 GATTTCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGC 850686 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 || |||||||||||||||||||| || || || ||||| || |||| || || || Sbjct 850685 ATTTGCAGCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGAT 850626 Query 118883 AGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGG---CTCGCCCCTCTTCCTCGTA 118939 || ||||| | ||| | || | || | || ||| ||| ||||| Sbjct 850625 GGCGAACCAGAGTTTCTGAGCCTTGATGGT--CTTTCGGCCCTTGCCGGCCTT-TTCGTA 850569 Query 118940 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTT-AT 118998 | ||||| |||||||| || | || | | || | ||| || || || || Sbjct 850568 GCCTTCATAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGG-GCATTCGG 850510 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 | || || | ||| | ||| | ||| | | || || ||||||||||| ||||| || | Sbjct 850509 CAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTA 850450 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 ||||||| || |||| ||||| || || | ||||| | || ||||| |||| Sbjct 850449 TCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCA 850390 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 | || | ||||| | || ||| |||||||| || || || || | || | | || Sbjct 850389 AGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACC-- 850332 Query 119179 TACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 | |||| ||| |||||| || || | || ||||||| ||| | || |||| Sbjct 850331 -AGGACGCTTGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCA 850273 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCT 119290 | || | |||||| | || | || || || || || || ||| | ||||||| Sbjct 850272 TAGGTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCC--CTTGGCTCG 850215 Query 119291 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 119350 | | ||| ||||| | || ||||| || || ||| ||||| || ||||| | | Sbjct 850214 AATGTTGTGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTT 850155 Query 119351 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 119410 | | | ||||||| || || || ||||| | | |||| ||||||||| || Sbjct 850154 CAAAGTCTCGTAGATGCCGTCAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGGA 850095 Query 119411 CATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443 ||||||||| || || || |||||||| || Sbjct 850094 CATTTGAGGGTGAGGAGTTCCGGCGTTGAACAG 850062 >seq11 Length=169478 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| ||||| || | ||||||||||| || ||||| ||||| ||||||||||| Sbjct 25102 GTGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAGACCAGGCATGAGACC 25043 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || |||||| | |||||| || | ||| || ||||||||||| || || || || Sbjct 25042 CCTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAAAATACCTTCAACGGC 24983 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCG 130205 ||||| || | | ||||| || |||| || ||||| | | ||| || | | Sbjct 24982 GGCGAAGGCGATCAATCGCTCGGCGAAGG-TCGATCGTTTGTCAGTGATCCATTTGAGTG 24924 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 |||| || ||||| || | |||||| |||| ||| | || ||||| ||||| Sbjct 24923 CCCATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCTTCGAAGAG 24872 >seq37 Length=816703 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || || || ||| |||||| || || ||||| || || ||||||||||||| |||| Sbjct 353583 CCTTCATCCCGGCTGATGAGCTCGTTGGAGAAAGTCAAGCCAGGCATGAGACCCCTCTTC 353524 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||| ||||||||| || ||| |||||||||||| || || |||||||| || || Sbjct 353523 TTCAGCCAGAAAATAGCCGCAAAGCTGCCAGAGAAGAATATGCCTTCCACACAAGCAAAA 353464 Query 130154 GC 130155 || Sbjct 353463 GC 353462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434906243280