Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq38 212 2e-49 seq12 149 2e-30 seq11 136 1e-26 >seq38 Length=784392 Score = 212 bits (234), Expect = 2e-49 Identities = 424/627 (68%), Gaps = 5/627 (1%) Strand=Plus/Minus Query 349523 CAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAA 349582 ||||| | || ||||| || || || ||||| | | || |||||||| | || || Sbjct 317607 CAATTCTCTCCTGAAGAGATCTCCTCCATGGTCCTGATCAAGATGAAGGAGACCGCCGAG 317548 Query 349583 GCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGAT 349642 || || | || | || || | | ||||| || ||||| || ||||| || || || Sbjct 317547 GCTTACCTCGGAGGTACCGTCTCCAAGGCTGTCATCACTGTTCCCGCCTACTTCAACGAC 317488 Query 349643 GCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATG 349702 |||||||| || || || ||||| || |||||| || | | ||||| | || Sbjct 317487 TCCCAGCGTCAAGCCACCAAGGATGCCGGTCTCATTGCTGGTCTTGAGGTTCTCCGTATC 317428 Query 349703 ATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAG-- 349760 || || || |||||||| || || || || || || || || || | | | | ||||| Sbjct 317427 ATCAACGAGCCCACTGCCGCTGCTATCGCCTACGGTCTCGACAAGAAGGGAG-CCAAGGG 317369 Query 349761 --aaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818 || | || | || || || ||| | |||||||||||||| ||||| || || | || Sbjct 317368 CGAACAGAACGTCCTCATCTTCGATCTCGGTGGTGGTACTTTCGATGTGTCCCTTTTGAC 317309 Query 349819 ACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGA 349878 |||| ||||| ||||| ||||| || |||||||| || || || ||||| || ||||| Sbjct 317308 CATTGAGGAGGGTATTTTCGAAGTCAAGGCAACTGCCGGAGACACCCATCTCGGAGGAGA 317249 Query 349879 AGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAAT 349938 ||| ||||| || |||||||| || ||||| | || || ||||| | || | Sbjct 317248 AGACTTTGACAACCGTCTCGTCAGCCACTTTGTCCAGGAGTTCAAGCGAAAGAACAAGAA 317189 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || || | || | |||| | || || || ||||| || ||||||||||| || Sbjct 317188 GGACATCACTGGCAACGCCCGAGCCGTCCGACGTCTGAGAACCGCCTGTGAACGTGCGAA 317129 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 | | | | || ||| | | ||||| | ||||||||||| ||||| ||||| | Sbjct 317128 GAGAACTCTGTCTTCTGCCGCTCAAACTACCATTGAAATTGACTCTCTCTTCGATGGTAT 317069 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAG 350118 || || | | || || || |||||||| || || ||| | || ||| || || | Sbjct 317068 TGACTTTTACACTTCCATCACCCGTGCTCGATTCGAGGAACTTTGCCAGGACCTCTTCCG 317009 Query 350119 AGCAACAATGGATCCTGTGGAAAAAGT 350145 | | || ||||| ||||| || || || Sbjct 317008 ATCCACCATGGAGCCTGTCGAGAAGGT 316982 >seq12 Length=1921170 Score = 149 bits (164), Expect = 2e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || ||||| | || || |||||||||||||| || || || || || || Sbjct 1262024 CATACCTCCTCGCAATCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 1262083 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| |||||||| | || |||||||||||||| | ||||| |||||||| Sbjct 1262084 GGAGAGAGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGG 1262143 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||||||||| || ||||| || |||| || ||||| || || | ||||| | ||| Sbjct 1262144 GGGAATTCCTTCCTTGTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGATTC 1262203 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| || || || | ||||| || || || Sbjct 1262204 AACCTCGAGCGTGATGGTCTTGCCCGTGAG 1262233 >seq11 Length=169478 Score = 136 bits (150), Expect = 1e-26 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || || || || || | ||| | |||||||| || || || || || || Sbjct 9954 CATACCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTC 10013 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||| || ||||| || |||||||| || || || || || || || |||||||| Sbjct 10014 GGAGAGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGG 10073 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || |||||||| || |||||| ||||| || || | || |||| | Sbjct 10074 AGGAATACCCTCCTTGTCCTGAATCTT-GCTTTTCACATTGTCGATGGTGTCGGATGACT 10132 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||| | || | ||||| || || | || || ||||| |||||||| Sbjct 10133 CAACTTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 136 bits (150), Expect = 1e-26 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| |||||||| || || || || || || || || || Sbjct 10182 CATACCACCACGGAGACGAAGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTC 10241 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| |||||||| ||||| || || || || || |||||||| Sbjct 10242 GGAGAGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGG 10301 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || |||||||| || ||| || || || ||||| | ||| || | | Sbjct 10302 AGGAATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCAATGGTATCGGAGGACT 10360 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || || | || || ||||| | || || || || || ||||| Sbjct 10361 CGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 ||||| || || ||||| || |||||||||||||| | | |||||||||||| ||||| Sbjct 10840 GTTCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGGGGAATG 10899 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 |||||||| || || || || | ||| || || ||||| | ||| || | || || || Sbjct 10900 CCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATGGTATCCGAGGACTCGACCTCG 10959 Query 140694 AGTGTAACTGTCTTTCCGGTTAG 140716 || || | ||||||||||| || Sbjct 10960 AGGGTGATAGTCTTTCCGGTAAG 10982 Score = 87.8 bits (96), Expect = 5e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 |||||||| | || ||||||||||| ||||| || || || | ||||| |||||||| Sbjct 9655 ACAAGATGCAAGGTGGACTCTTTTTGGATATTGTAGTCTGAGAGAGTTCGTCCATCTTCC 9714 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 || || ||||| || || || | ||||| ||||||||||| || || ||| Sbjct 9715 AGCTGCTTTCCGGCGAAAATCAATCGTTGTTGATCAGGAGGGATGCCCTCT 9765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253662260514