Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq33 244 1e-59 seq37 107 2e-18 seq11 86.0 7e-12 >seq33 Length=1453386 Score = 244 bits (270), Expect = 1e-59 Identities = 503/742 (68%), Gaps = 16/742 (2%) Strand=Plus/Minus Query 79054 AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113 ||||| |||| |||||| ||||| |||||| || ||| || |||||||| || Sbjct 850795 AGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAGTATTCAATGATTTCGGTA 850736 Query 79114 CACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCG 79173 ||||| || || ||||||||||| || | || ||| |||||| ||| | || || Sbjct 850735 CACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTGGACTTGGCATTTGCAGCA 850676 Query 79174 TCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAG 79233 |||||||| |||||| || || |||||||| ||| || || | | || |||| Sbjct 850675 TCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCCTCAAGGATGGCGAACCAG 850616 Query 79234 ATGTCCCGGGCCCGGACAACCTT------CTTGTACCGACCCTGTGCGACGTA-CGTCCG 79286 | | | | ||| || ||| |||| ||| || | | |||| | | | Sbjct 850615 AGTTTCTGAGCCTTGATGGTCTTTCGGCCCTTG--CCGGCCTTTT----CGTAGCCTTCA 850562 Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 || | | | || | | |||| |||||||| || || ||||| ||| || || Sbjct 850561 -TAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAGGGCATTCGGCAGGACA 850503 Query 79347 CATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 ||| ||| |||||| |||| || || || |||||| ||||| || ||||| || Sbjct 850502 CATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTATCCAGAG 850443 Query 79407 GGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAG 79466 ||| ||| || || ||| || | ||| || | || || ||| |||| ||||| Sbjct 850442 GGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCAAGTCGAG 850383 Query 79467 AAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTT 79526 ||||| | || ||||||||||| ||||| ||||||||||| || | ||| ||||| Sbjct 850382 GAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACCAGGACGCTT 850323 Query 79527 GCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGAT 79586 | || ||||||| |||||| || || ||| || || |||||||||| || ||||| Sbjct 850322 GTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATAGGTACGAT 850263 Query 79587 GCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCA 79646 |||| | | ||||| || ||| || | || | || |||||||| | | | Sbjct 850262 ACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATGTT-GTGAA 850204 Query 79647 -GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 ||| | |||||| || |||| ||||||||| || ||||| ||| | ||||||| Sbjct 850203 TGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTCAAAGTCTCGT 850144 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765 ||||||| || || |||||||| ||| ||||| ||||||||| ||||| || |||| Sbjct 850143 AGATGCCGTCAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGGACATTTGAGGGT 850084 Query 79766 TGTTCGTACCGGCGTTGAAGAG 79787 || ||||||||||| || Sbjct 850083 GAGGAGTTCCGGCGTTGAACAG 850062 Score = 230 bits (254), Expect = 3e-55 Identities = 814/1246 (65%), Gaps = 62/1246 (5%) Strand=Plus/Plus Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 || ||||||||||| || |||| || ||||| ||| ||||| || || ||| Sbjct 850062 CTGTTCAACGCCGGAACTCCTCACCCTCAAATGTCCTCCTGCTTCCTTGTCGCCATGCGA 850121 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336 || ||| |||||| |||||||||||||| | ||| ||||| || ||||||||| Sbjct 850122 GACGACTCCATTGACGGCATCTACGAGACTTTGAAGACCTGCGCTCAGATCTCCAAGACT 850181 Query 19337 TCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCG-GTCGAGTGGTAC-ACGAATCAAT 19393 |||| |||||||| | ||| | | | || || || | | || | | | || || Sbjct 850182 GCCGGAGGTATCGGACTTCACATTCAC-AACATTCGAGCCAAGGGCTCCTAC--ATTGCC 850238 Query 19394 GGGACGAACGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGC 19452 || || |||||| || ||| ||||||||| || |||||||| | ||| || ||| || Sbjct 850239 GGTACCAACGGA-TACTCGAACGGTATCGTACCTATGCTCCGAGCCTTTGACGCCACCGC 850297 Query 19453 CAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCC 19512 | |||||| ||||||| || ||| || || | || |||||||| || ||||| Sbjct 850298 TCGTTACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTATCTAGAGCC 850357 Query 19513 ATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGAT 19572 |||||||| || ||| | || |||||||| |||| ||| || ||| | || ||| | Sbjct 850358 CTGGCACGCCGATGTCTTTGACTTCCTCGACTTGCGAAAGAATCACGGTAAGGAAGAGGT 850417 Query 19573 GCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGA 19632 || || || || ||| ||| | ||||| || ||||| |||||| || || || Sbjct 850418 CCGAGCCCGTGATCTTTTCTACGCCCTCTGGATACCCGACCTGTTCATGAAGCGAGTCGA 850477 Query 19633 GAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTA 19692 |||| || ||| ||| ||||| || |||||||||||| || |||| ||| | Sbjct 850478 AGCCGACGGTGACTGGACCCTCATGTGTCCTGCCGAATGCCCTGGTCTCGCCGATGTCCA 850537 Query 19693 CGGCGAGGCGTTCAATGAGTTGTACCGGACT-TACGTAGCC-----CAGGGCCGGTTCAA 19746 | ||| || ||| ||| | | ||| || | || | | |||||| ||| Sbjct 850538 TG--GAGCCG---AAT---TTGAA--GCACTCTATGAAGGCTACGAAAAGGCCGG--CAA 850585 Query 19747 G------AAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGA 19800 | ||| || ||| | | | ||||| | | |||| | |||| ||| Sbjct 850586 GGGCCGAAAGACCATCAAGGCTCAGAAACTCTGGTTCGCCATCCTTGAGGCCCAGACCGA 850645 Query 19801 GACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAA 19860 |||||| || || |||||| |||||||| || || || |||||||| || || ||| | Sbjct 850646 GACCGGTACTCCCTACATGCTTTACAAGGATGCTGCAAATGCCAAGTCCAACCAAAAGCA 850705 Query 19861 CATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGA 19920 | | || | |||||||| |||||| ||||||| |||||||| || || || || Sbjct 850706 CCTGGGAACCATCAAGTCTTCCAACTTGTGTACCGAAATCATTGAATACTCTGCTCCTGA 850765 Query 19921 CGAGACTGCCGTGTGTAATCTGGCGTCCCT-GTGCCTGCCGACTT--TCGTCAAG----G 19973 |||| ||||| || || |||| || || | | | ||| ||| | | || | | Sbjct 850766 CGAGGTCGCCGTCTGCAACTTGGCCTCGCTCGCTCTTCCCGCCTTTGTTGACATGGAGAG 850825 Query 19974 CCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGA 20033 | | | |||||| ||| || ||||| | ||| || || || ||||| Sbjct 850826 ACGGGT-GTACGACTTCAAGAAACTGCACGAGATCACCAAAGTTGTAACAAAGAATCTCG 850884 Query 20034 ATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCC 20093 ||| || ||| | || |||| ||||| | ||| ||| | || || ||| | || | Sbjct 850885 ATCAGGTTATCAACCGCAACTACTACCCCGTCAAGGAGGCTCAGAACTCTAATTTCCGTC 850944 Query 20094 ACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCG-----G 20148 || | || |||| | || || || || || ||||| | ||||||| || | | Sbjct 850945 ACAGACCCATCGGTCTGGGTGTTCAAGGTCTCGCCGATGCTTTCATG-GCCTTGAGAATG 851003 Query 20149 CCTCTC-ATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGT 20207 ||| || ||||| | | || || || |||||||||| ||||||||| | | | Sbjct 851004 CCTTTCGATTCGCC--TGCC---GCTCGAGAGCTCAACATTCAGATCTTCGAGACAATCT 851058 Query 20208 ACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGT 20267 |||| || || | || |||||||| || || | | |||| || || | | Sbjct 851059 ACCATGCCGCGTTGGAGGCTTCGTGCGAGCTGGCTCAGGTCCACGGGAAATATGAATCTT 851118 Query 20268 TCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGG-CGT-----CA 20321 | |||| || ||| || ||||| | || || ||||||||||| ||| | Sbjct 851119 ACGAGGGATCACCCATCTCTGAGGGCAAACTACAATTTGACATGTGGGGCCGTGTGCCCT 851178 Query 20322 CTGAGAATGAGTTTTGGAGCGCCCTCAAGGTTGAGATCAAGACC--CACGGGCTTCGCAA 20379 |||| | |||| || ||| | | |||| | || ||||| |||| || Sbjct 851179 CTGATCTCTGGGACTGGACCGACCTGCGAGCTCAGAT--TGCCCAACACGGAGTTCGAAA 851236 Query 20380 CTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 |||| | ||||||||||| ||||| ||||||||||| | |||||| Sbjct 851237 CTCGCTCCTCGTCGCGCCTATGCCTACCGCCTCGACATCGCAGATC 851282 >seq37 Length=816703 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||| || |||||||| || |||||||||||| || |||||||||||||| Sbjct 353462 GCTTTTGCTTGTGTGGAAGGCATATTCTTCTCTGGCAGCTTTGCGGCTATTTTCTGGCTG 353521 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || |||||||| ||| ||| ||||||||||||||| || |||||| || Sbjct 353522 AAGAAGAGGGGTCTCATGCCTGGCTTGACTTTCTCCAACGAGCTCATCAGCCGGGATGAA 353581 Query 60111 GG 60112 || Sbjct 353582 GG 353583 >seq11 Length=169478 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| ||||| || ||||||||||| ||||| | || |||||||| || ||| | || Sbjct 24985 CGTTGAAGGTATTTTCTTCTCTGGTTCGTTTGCCTCCATCTTCTGGCTTAAGAAGAGGGG 25044 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||| || || | ||||||||||| || || || |||| ||||| ||||| Sbjct 25045 TCTCATGCCTGGTCTCACATTCTCCAACGAACTCATCTCTAGGGATGAGGGACTCCA 25101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524539450720