Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq33 194 2e-44 >seq33 Length=1453386 Score = 194 bits (214), Expect = 2e-44 Identities = 461/686 (67%), Gaps = 22/686 (3%) Strand=Plus/Plus Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 ||||||||||| || || ||||||||| ||||| ||||||||| || || ||| Sbjct 850062 CTGTTCAACGCCGGAACTCCTCACCCTCAAATGTCCTCCTGCTTCCTTGTCGCCATGCGA 850121 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 || ||||| || ||||||||||||||||| | ||| || || || ||||||||| Sbjct 850122 GACGACTCCATTGACGGCATCTACGAGACTTTGAAGACCTGCGCTCAGATCTCCAAGACT 850181 Query 53414 TCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472 | || |||||||| | ||| | | | ||| | || || || ||| | || || Sbjct 850182 GCCGGAGGTATCGGACTTCACATTCAC-AACATTCGAGCCAAGGGCTCCTACATTGCCGG 850240 Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 || ||||| | | | || ||||| ||||||||||| | ||| || ||| || || Sbjct 850241 TACCAACGGATACTCGAACGGTATCGTACCTATGCTCCGAGCCTTTGACGCCACCGCTCG 850300 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 |||||| |||||||||| ||||| || | || |||||||| || ||||| || Sbjct 850301 TTACGTCGACCAGGGTGGAAACAAGCGTCCTGGTGCCTTTGCCATCTATCTAGAGCCCTG 850360 Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 ||||||||| | | || || ||||| |||| |||||| ||| | |||||| | || Sbjct 850361 GCACGCCGATGTCTTTGACTTCCTCGACTTGCGAAAGAATCACGGTAAGGAAGAGGTCCG 850420 Query 53653 CTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 |||||| || || ||| || || ||||| || ||||| |||||| || | | || Sbjct 850421 AGCCCGTGATCTTTTCTAC-GCCCTCTGGATACCCGACCTGTTCATG--AAGCGAGTCGA 850477 Query 53712 AG--GACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769 || |||| || ||| ||| ||||| || ||| ||||| || ||| | |||| | Sbjct 850478 AGCCGACGGTGACTGGACCCTCATGTGTCCTGCCGAATGCCCTGGTCTCGCCGATGTCCA 850537 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAG---- 53824 || | || ||| | | | ||| | | | |||| | | ||||| |||| Sbjct 850538 TGGAGCCGAATTTGAAGCACTCTAT-GAAGGCTACGAA----AAGGCCG--GCAAGGGCC 850590 Query 53825 --AAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGG 53882 |||| ||||||| | | | ||| || ||||| || |||| ||||| | Sbjct 850591 GAAAGACCATCAAGGCTCAGAAACTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACCG 850650 Query 53883 GAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCG 53942 | || || |||||| ||||||||| | | || | ||| |||||| ||| || | | Sbjct 850651 GTACTCCCTACATGCTTTACAAGGATGCTGCAAATGCCAAGTCCAACCAAAAGCACCTGG 850710 Query 53943 GCGTCATCAAATCGAGCAACTTATGT 53968 | |||||| || |||||| ||| Sbjct 850711 GAACCATCAAGTCTTCCAACTTGTGT 850736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215740072400