Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq33 233 2e-56 seq11 176 5e-39 seq12 116 4e-21 seq37 82.4 9e-11 seq36 82.4 9e-11 >seq33 Length=1453386 Score = 233 bits (258), Expect = 2e-56 Identities = 513/760 (68%), Gaps = 19/760 (3%) Strand=Plus/Minus Query 80887 ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTA 80946 ||||| || ||||| || || |||| ||||| ||||| ||||| |||| | | | Sbjct 850813 ACAAAGGCGGGAAGAGCGAGCGAGGCCAAGTTGCAGACGGCGACCTCGTCAGGAGCAGAG 850754 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 | || | |||||| || ||||| || |||||||| || || ||||||| || ||||| Sbjct 850753 TATTCAATGATTTCGGTACACAAGTTGGAAGACTTGATGGTTCCCAGGTGCTTTTGGTTG 850694 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGAC 81066 |||||||| || ||| |||||||| |||||| || |||||||||||| ||| | | Sbjct 850693 GACTTGGCATTTGCAGCATCCTTGTAAAGCATGTAGGGAGTACCGGTCTCGGTCTGGGCC 850634 Query 81067 TTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCC 81126 | ||||||||| ||| | | | ||||||| ||| ||| ||||| |||| Sbjct 850633 TCAAGGATGGCGAACCAGAGTTTCTGAGCCTTGATGGTCTTTCGGCCCTTGCC---GGCC 850577 Query 81127 A---CATA--CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTG 81181 | || ||| | || | | || || | ||| || || | || | ||| | | Sbjct 850576 TTTTCGTAGCCTT--CATAGAGTGCTTCAAATTCGGCTCCATGGACATCGGCGAGACCAG 850519 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 |||| ||| ||| ||||| ||| |||||| |||| || || ||||||||| Sbjct 850518 GGCATTCGGCAGGACACATGAGGGTCCAGTCACCGTCGGCTTCGACTCGCTTCATGAACA 850459 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 ||| || |||||||||||| ||| || || ||| || |||| || | ||| || | Sbjct 850458 GGTCGGGTATCCAGAGGGCGTAGAAAAGATCACGGGCTCGGACCTCTTCCTTACCGTGAT 850399 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | ||||| ||||| ||||| | || || || ||||| ||||| ||||| | ||| | Sbjct 850398 TCTTTCGCAAGTCGAGGAAGTCAAAGACATCGGCGTGCCAGGGCTCTAGATAGATGGCAA 850339 Query 81362 TCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACAC 81418 | || || | |||||||||| ||||||||| || || |||| ||| | | Sbjct 850338 AGGCACCAGGACGCTTGTTTCCACCCTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTC 850279 Query 81419 GCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGG 81478 | | |||||| | |||||| | || | ||||| ||||| | || || ||||||| Sbjct 850278 GGAGCATAGGTACGATACCGTTCGAGTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGG 850219 Query 81479 CGCGCACCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACAC 81537 | || | ||| ||| || ||| ||||| || || | ||| || |||||||| || Sbjct 850218 CTCGAATGTTG-TGAATGTGAAGTCCGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAG 850160 Query 81538 CGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAG 81597 |||| ||||| || || || || ||| || | | |||| | | | ||| ||| Sbjct 850159 GTCTTCAAAGTCTCGTAGATGCCGTCAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAG 850100 Query 81598 CTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAG 81635 ||||| |||||| | ||| ||||| |||||||| Sbjct 850099 GAGGACATTTGAGGG--TGAGGAGTTCCGGCGTTGAACAG 850062 >seq11 Length=169478 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | |||||||| || || || || || || ||||| Sbjct 10412 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGTCCTCC 10353 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||| || ||||||||||||||||| |||||||| || || Sbjct 10352 GATACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10293 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| |||||||| |||||||| || | || ||||| | ||||| || Sbjct 10292 CAGCGACTCATTTTCGCTGGTAAACAACTCGAAGACGGACGAACCCTCTCCGACTACAAC 10233 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || |||||||| || | ||||| || ||||| Sbjct 10232 ATCCAGAAGGAATCAACCCTTCATCTCGTTCTTCGTCTCCGTGGTGG 10186 Score = 149 bits (164), Expect = 7e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || ||| | || ||||||||| Sbjct 10184 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAAGTTGAGTCATCC 10125 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| |||| || ||||||||||||||||| |||||||| || || Sbjct 10124 GACACCATCGACAATGTGAAAAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10065 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || ||||| ||||||||||||| ||||| || | ||||| || Sbjct 10064 CAGCGACTCATTTTCGCCGGTAAACAACTCGAGGATGGACGTACACTCTCCGACTACAAC 10005 Query 27586 GTCCAAAAGGAATCCAC 27602 |||| ||||| || || Sbjct 10004 ATCCAGAAGGAGTCTAC 9988 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| |||||||||||||||||||| || ||| ||||| |||| || | ||| Sbjct 10668 CTCACCGGGAAGACTATTACTCTTGAGGTCGAATCATCTGATACGATTGACAACGTCAAG 10609 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || |||||||||||||||||||| || ||||| || ||| | ||||| || || Sbjct 10608 TCGAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAACAACGTTTGATTTTCGCGGGA 10549 Query 27547 AAGCAACTCGAGGATGATCGTACCCT 27572 ||||| || ||||||| ||| || || Sbjct 10548 AAGCAGCTTGAGGATGGTCGAACTCT 10523 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 ||||| || ||||| || || || || | ||||| || || ||||| || || |||| Sbjct 9764 GAGGGCATCCCTCCTGATCAACAACGATTGATTTTCGCCGGAAAGCAGCTGGAAGATGGA 9705 Query 27565 CGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 || || || ||||||| ||| ||||||| || ||||| | ||||| ||||||||||| Sbjct 9704 CGAACTCTCTCAGACTACAATATCCAAAAAGAGTCCACCTTGCATCTTGTCTTGCGTCTG 9645 Query 27625 CGCGGTGG 27632 || || || Sbjct 9644 CGAGGAGG 9637 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || || || || || || || |||| || | ||| | || Sbjct 9569 CTCACTGGTAAGACGATCACCCTCGAAGTCGAATCCTCAGATACTATCGACAATGTCAAA 9510 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 |||| || ||||||||||| || || || || ||||||||||| | || || ||||| Sbjct 9509 TCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAGCAGCGGTTGATCTTCGCTGGA 9450 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || || |||| || || || ||||| || |||||||||| || || | Sbjct 9449 AAGCAGCTGGAAGATGGACGCACGCTCAGTGACTACAACATCCAAAAGGAGTCTACCTTG 9390 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 || | || | || || || ||||| ||| Sbjct 9389 CACTTGGTGCTTCGGCTCCGTGGTGGTCAA 9360 >seq12 Length=1921170 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || || || |||||||| || ||| | || | ||| | ||| Sbjct 1262233 CTCACGGGCAAGACCATCACGCTCGAGGTTGAATCCTCTGACACTATCGACAATGTCAAG 1262174 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 |||| || ||||||||||| |||||||| || || || || || | || |||||||| Sbjct 1262173 TCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAACAACGATTGATCTTTGCTGGA 1262114 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| | || |||| || || || | ||||| || |||| ||||| || |||||| Sbjct 1262113 AAGCAGTTGGAAGATGGACGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTACTCTT 1262054 Query 27607 CATCTAGTCTTG 27618 || || |||||| Sbjct 1262053 CACCTCGTCTTG 1262042 >seq37 Length=816703 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| ||||||||||| || ||||| ||||| || ||||||||||||| Sbjct 353462 GCTTTTGCTTGTGTGGAAGGCATATTCTTCTCTGGCAGCTTTGCGGCTATTTTCTGGCTG 353521 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||| |||| || ||||| || || | || || |||||||| ||| ||||| || Sbjct 353522 AAGAAGAGGGGTCTCATGCCTGGCTTGACTTTCTCCAACGAGCTCATCAGCCGGGATGAA 353581 Query 64846 GGG 64848 ||| Sbjct 353582 GGG 353584 >seq36 Length=922397 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || || ||||| || ||||| || | || | ||| | ||| Sbjct 25061 CTCACGGGTAAGACCATCACCCTTGAAGTCGAGTCTTCCGACACTATCGACAATGTCAAG 25002 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || ||||||||||| ||||||||||| ||||| ||||| | ||||| ||||| Sbjct 25001 TCCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAACAGCGATTGATTTTCGCTGGA 24942 Query 27547 AAGCA 27551 ||||| Sbjct 24941 AAGCA 24937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310129102560